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Pfam Domains mapped on to the structure: 3D5P

No. Chain ID Pfam ID Pfam Description Linkout - Pfam Linkout - CDD
1 A PF09346 SMI1 / KNR4 family (SUKH-1) PF09346 PF09346

Conserved Domain Database Superfamily Annotations: 3D5P

No. PDB ID PSSM ID CDD Accession Superfamily Short Name Linkout - CDD
1 3D5P 207472 cl01747 SMI1_KNR4 superfamily - -
Structural Details of PDB entry 3D5P

Structural Details of PDB entry 3D5P

PDBid Chains Hinge Swapped Domain
3D5P A,B A:11-13,B:11-13 A:0-10,B:0-10

Swapped-domain interface residues and interactions:

Chains Residues
A 0, 2, 3, 4, 5, 6, 7, 8, 9, 10, 12, 36, 126,
B 0, 2, 3, 4, 5, 6, 7, 8, 9, 10, 12, 36, 126,

Non-swapped-domain interface residues and interactions:

Chains Residues
A 33, 37, 40, 48, 119, 120, 122, 123, 124, 127, 132,
B 33, 37, 40, 48, 119, 120, 122, 123, 124, 127,

Swapped domains are represented using trasperent spheres.
Non-swapped part is represented using light color and cartoon representation.
Hinge region is shown in yellow color.

Mutations in critical regions:

Chains Hinge Domain swapped interface Non-swapped interface Swapped Domain
ANo mutationNo mutationNo mutationNo mutation
BNo mutationNo mutationNo mutationNo mutation

HIDE output:

Homologues found through HIDE algorithm

JMOL Visualization:

Jmol_logo            Jmol_logo            Jmol_logo

2D-plot:

A:3D5P B:3D5P

JOY Structural annotation for hinge hinge and swapped domain:

Hinge Swapped domain

JOY output:

ali file:3D5P.ali
atm file:3D5P.atm
cof file:3D5P.cof
hbd file:3D5P.hbd
html file:3D5P.html
pdb file:3D5P.pdb
ps file:3D5P.ps
psa file:3D5P.psa
rtf file:3D5P.rtf
sst file:3D5P.sst
tem file:3D5P.tem