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Pfam Domains mapped on to the structure: 3D1L

No. Chain ID Pfam ID Pfam Description Linkout - Pfam Linkout - CDD
1 A PF01488 Shikimate / quinate 5-dehydrogenase PF01488 PF01488
2 A PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase PF03446 PF03446
3 A PF03807 NADP oxidoreductase coenzyme F420-dependent PF03807 PF03807
4 A PF00106 short chain dehydrogenase PF00106 PF00106
5 A PF10728 Domain of unknown function (DUF2520) PF10728 PF10728

Conserved Domain Database Superfamily Annotations: 3D1L

No. PDB ID PSSM ID CDD Accession Superfamily Short Name Linkout - CDD
1 3D1L 212616 NADB_Rossmann superfamily N -
2 3D1L 204549 cl11323 DUF2520 superfamily - -
Structural Details of PDB entry 3D1L

Structural Details of PDB entry 3D1L

PDBid Chains Hinge Swapped Domain
3D1L A,B A:162-165,B:162-165 A:166-263,B:166-263

Swapped-domain interface residues and interactions:

Chains Residues
A 122, 135, 166, 167, 170, 171, 173, 174, 175, 176, 177, 178, 179, 180, 181, 182, 183, 184, 186, 187, 188, 189, 190, 191, 192, 193, 196, 198, 200, 201, 202, 204, 205, 206, 207, 208, 209, 210, 211, 212, 213, 214, 215, 216, 217, 219, 220, 221, 222, 223, 224, 225, 226, 231, 233, 234, 237, 238, 242, 245, 247, 250, 251, 252, 254, 255, 256, 258, 259, 262, 263,
B 101, 121, 122, 124, 126, 133, 135, 159, 167, 169, 170, 171, 172, 173, 174, 175, 176, 177, 178, 179, 180, 181, 182, 183, 184, 186, 187, 188, 189, 190, 191, 192, 193, 196, 197, 198, 199, 200, 201, 202, 204, 205, 206, 207, 208, 209, 210, 211, 214, 215, 219, 220, 222, 223, 224, 225, 226, 238, 242, 245, 247, 250, 251, 252, 254, 255, 256, 258, 259,

Non-swapped-domain interface residues and interactions:

Chains Residues
A 123, 133, 137, 159, 161,
B 17, 75, 123, 127, 129,

Swapped domains are represented using trasperent spheres.
Non-swapped part is represented using light color and cartoon representation.
Hinge region is shown in yellow color.

Mutations in critical regions:

Chains Hinge Domain swapped interface Non-swapped interface Swapped Domain
ANo mutationNo mutationNo mutationNo mutation
BNo mutationNo mutationNo mutationNo mutation

HIDE output:

Homologues found through HIDE algorithm

JMOL Visualization:

Jmol_logo            Jmol_logo            Jmol_logo

2D-plot:

A:3D1L B:3D1L

JOY Structural annotation for hinge hinge and swapped domain:

Hinge Swapped domain

JOY output:

ali file:3D1L.ali
atm file:3D1L.atm
cof file:3D1L.cof
hbd file:3D1L.hbd
html file:3D1L.html
pdb file:3D1L.pdb
ps file:3D1L.ps
psa file:3D1L.psa
rtf file:3D1L.rtf
sst file:3D1L.sst
tem file:3D1L.tem