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Structural Details of PDB entry 3C6V

Structural Details of PDB entry 3C6V

PDBid Chains Hinge Swapped Domain
3C6V A,D,C,B A:107-110,D:107-110,C:107-110,B:107-110 A:111-140,D:111-140,C:111-140,B:111-140

Swapped-domain interface residues and interactions:

Chains Residues
A 87, 100, 101, 102, 103, 104, 105, 111, 112, 113, 114, 115, 116, 117, 140,
B 87, 100, 101, 102, 103, 104, 105, 111, 112, 113, 114, 115, 116, 117, 140,
C 87, 100, 101, 102, 103, 104, 105, 111, 112, 113, 114, 115, 116, 117,

Non-swapped-domain interface residues and interactions:

Chains Residues
A 3, 5, 7, 15, 18, 19, 22, 23, 26, 36, 37, 39, 40, 41, 42, 43, 44, 46, 49, 50, 51, 52, 53, 54, 55, 63, 65, 67, 79, 83, 106, 107, 108, 109,
B 3, 3, 5, 7, 15, 18, 19, 22, 23, 26, 36, 37, 39, 40, 41, 42, 43, 44, 46, 49, 50, 51, 52, 53, 54, 55, 57, 63, 65, 67, 71, 74, 79, 83, 106, 107, 108, 109,
C 3, 5, 7, 15, 18, 19, 22, 23, 26, 36, 37, 39, 40, 41, 42, 43, 44, 46, 49, 50, 51, 52, 53, 54, 55, 56, 63, 65, 67, 69, 79, 83, 106, 107, 108, 109,

Swapped domains are represented using trasperent spheres.
Non-swapped part is represented using light color and cartoon representation.
Hinge region is shown in yellow color.

Mutations in critical regions:

Chains Hinge Domain swapped interface Non-swapped interface Swapped Domain
ANo mutationNo mutationNo mutationNo mutation
DNo mutationNo mutationNo mutationNo mutation
CNo mutationNo mutationNo mutationNo mutation
BNo mutationNo mutationNo mutationNo mutation

HIDE output:

Homologues found through HIDE algorithm

JMOL Visualization:

Jmol_logo            Jmol_logo            Jmol_logo

2D-plot:

A:3C6V B:3C6V C:3C6V D:3C6V

JOY Structural annotation for hinge hinge and swapped domain:

Hinge Swapped domain

JOY output:

ali file:3C6V.ali
atm file:3C6V.atm
cof file:3C6V.cof
hbd file:3C6V.hbd
html file:3C6V.html
pdb file:3C6V.pdb
ps file:3C6V.ps
psa file:3C6V.psa
rtf file:3C6V.rtf
sst file:3C6V.sst
tem file:3C6V.tem