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Pfam Domains mapped on to the structure: 3BM5

No. Chain ID Pfam ID Pfam Description Linkout - Pfam Linkout - CDD
1 A PF00291 Pyridoxal-phosphate dependent enzyme PF00291 PF00291

Conserved Domain Database Superfamily Annotations: 3BM5

No. PDB ID PSSM ID CDD Accession Superfamily Short Name Linkout - CDD
1 3BM5 107204 cd01561 CBS_like - cl00342
2 3BM5 212605 cl00342 Trp-synth-beta_II superfamily - -
3 3BM5 212605 cl00342 Trp-synth-beta_II superfamily - -
Structural Details of PDB entry 3BM5

Structural Details of PDB entry 3BM5

PDBid Chains Hinge Swapped Domain
3BM5 A,B A:10-26,B:10-26 A:2-9,B:2-9

Swapped-domain interface residues and interactions:

Chains Residues
A 3, 4, 5, 6, 7, 8, 9, 19, 20, 21, 22, 23, 175, 178, 179,
B 3, 4, 5, 6, 7, 8, 9, 18, 19, 20, 21, 22, 23, 175, 178, 179,

Non-swapped-domain interface residues and interactions:

Chains Residues
A 10, 11, 12, 13, 14, 15, 16, 17, 18, 25, 26, 27, 28, 30, 43, 45, 50, 51, 53, 54, 55, 63, 67, 98, 99, 100, 115, 118, 119, 122, 123, 124, 171, 174, 270, 271, 273, 274, 275, 276, 309, 311, 312, 314, 319, 339,
B 10, 11, 12, 13, 14, 15, 16, 17, 25, 26, 27, 28, 30, 43, 45, 50, 51, 53, 54, 55, 63, 67, 98, 99, 100, 115, 118, 119, 121, 122, 123, 124, 171, 180, 270, 271, 273, 274, 275, 276, 309, 311, 312, 314, 315, 319, 320,

Swapped domains are represented using trasperent spheres.
Non-swapped part is represented using light color and cartoon representation.
Hinge region is shown in yellow color.

Mutations in critical regions:

Chains Hinge Domain swapped interface Non-swapped interface Swapped Domain
ANo mutationNo mutationNo mutationNo mutation
BNo mutationNo mutationNo mutationNo mutation

HIDE output:

Homologues found through HIDE algorithm

JMOL Visualization:

Jmol_logo            Jmol_logo            Jmol_logo

2D-plot:

A:3BM5 B:3BM5

JOY Structural annotation for hinge hinge and swapped domain:

Hinge Swapped domain

JOY output:

ali file:3BM5.ali
atm file:3BM5.atm
cof file:3BM5.cof
hbd file:3BM5.hbd
html file:3BM5.html
pdb file:3BM5.pdb
ps file:3BM5.ps
psa file:3BM5.psa
rtf file:3BM5.rtf
sst file:3BM5.sst
tem file:3BM5.tem