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Pfam Domains mapped on to the structure: 3BJ6

No. Chain ID Pfam ID Pfam Description Linkout - Pfam Linkout - CDD
1 A PF12802 MarR family PF12802 PF12802
2 A PF13463 Winged helix DNA-binding domain PF13463 PF13463

Conserved Domain Database Superfamily Annotations: 3BJ6

No. PDB ID PSSM ID CDD Accession Superfamily Short Name Linkout - CDD
1 3BJ6 212173 cl00088 HTH superfamily - -
2 3BJ6 212173 cl00088 HTH superfamily - -
Structural Details of PDB entry 3BJ6

Structural Details of PDB entry 3BJ6

PDBid Chains Hinge Swapped Domain
3BJ6 A,B A:121-124,B:121-124 A:125-149,B:125-149

Swapped-domain interface residues and interactions:

Chains Residues
A 8, 11, 14, 17, 18, 21, 22, 24, 25, 125, 127, 128, 129, 130, 131, 132, 133, 134, 135, 136, 137, 138, 139, 141, 142, 143, 145, 146, 149,
B 8, 11, 14, 18, 21, 22, 24, 25, 125, 127, 128, 129, 130, 131, 132, 133, 134, 135, 136, 137, 138, 139, 141, 142, 143, 145, 146,

Non-swapped-domain interface residues and interactions:

Chains Residues
A 4, 5, 7, 9, 10, 12, 13, 15, 16, 19, 20, 28, 40, 44, 61, 62, 109, 115, 116, 117, 118, 119, 120, 123,
B 4, 5, 7, 9, 10, 12, 13, 15, 16, 17, 19, 20, 23, 28, 40, 44, 62, 109, 115, 116, 117, 118, 119, 120, 123,

Swapped domains are represented using trasperent spheres.
Non-swapped part is represented using light color and cartoon representation.
Hinge region is shown in yellow color.

Mutations in critical regions:

Chains Hinge Domain swapped interface Non-swapped interface Swapped Domain
ANo mutationNo mutationNo mutationNo mutation
BNo mutationNo mutationNo mutationNo mutation

HIDE output:

Homologues found through HIDE algorithm

JMOL Visualization:

Jmol_logo            Jmol_logo            Jmol_logo

2D-plot:

A:3BJ6 B:3BJ6

JOY Structural annotation for hinge hinge and swapped domain:

Hinge Swapped domain

JOY output:

ali file:3BJ6.ali
atm file:3BJ6.atm
cof file:3BJ6.cof
hbd file:3BJ6.hbd
html file:3BJ6.html
pdb file:3BJ6.pdb
ps file:3BJ6.ps
psa file:3BJ6.psa
rtf file:3BJ6.rtf
sst file:3BJ6.sst
tem file:3BJ6.tem