Home BrowseSearch Help Group

Pfam Domains mapped on to the structure: 3B9I

No. Chain ID Pfam ID Pfam Description Linkout - Pfam Linkout - CDD
1 A PF00229 TNF(Tumour Necrosis Factor) family PF00229 PF00229

Conserved Domain Database Superfamily Annotations: 3B9I

No. PDB ID PSSM ID CDD Accession Superfamily Short Name Linkout - CDD
1 3B9I 206860 cl00147 TNF superfamily - -
Structural Details of PDB entry 3B9I

Structural Details of PDB entry 3B9I

PDBid Chains Hinge Swapped Domain
3B9I A,B A:167-170,B:167-170 A:171-173,B:171-173

Swapped-domain interface residues and interactions:

Chains Residues
A 62, 63, 64, 65, 66, 67, 68, 171, 172, 173,
B 62, 63, 64, 65, 66, 67, 68, 171, 172,

Non-swapped-domain interface residues and interactions:

Chains Residues
A 51, 53, 55, 90, 92, 94, 121, 122, 123, 124, 125, 129, 130, 131, 133, 134, 135, 160, 164, 166, 167, 169,
B 51, 53, 55, 77, 90, 92, 94, 121, 123, 124, 125, 128, 129, 130, 131, 133, 134, 135, 160, 164, 166, 167, 169, 170,

Swapped domains are represented using trasperent spheres.
Non-swapped part is represented using light color and cartoon representation.
Hinge region is shown in yellow color.

Mutations in critical regions:

Chains Hinge Domain swapped interface Non-swapped interface Swapped Domain
ANo mutationNo mutationNo mutationNo mutation
BNo mutationNo mutationNo mutationNo mutation

HIDE output:

Homologues found through HIDE algorithm

JMOL Visualization:

Jmol_logo            Jmol_logo            Jmol_logo

2D-plot:

A:3B9I B:3B9I

JOY Structural annotation for hinge hinge and swapped domain:

Hinge Swapped domain

JOY output:

ali file:3B9I.ali
atm file:3B9I.atm
cof file:3B9I.cof
hbd file:3B9I.hbd
html file:3B9I.html
pdb file:3B9I.pdb
ps file:3B9I.ps
psa file:3B9I.psa
rtf file:3B9I.rtf
sst file:3B9I.sst
tem file:3B9I.tem