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Pfam Domains mapped on to the structure: 2ZDR

No. Chain ID Pfam ID Pfam Description Linkout - Pfam Linkout - CDD
1 A PF03102 NeuB family PF03102 PF03102
2 A PF08666 SAF domain PF08666 PF08666

Conserved Domain Database Superfamily Annotations: 2ZDR

No. PDB ID PSSM ID CDD Accession Superfamily Short Name Linkout - CDD
1 2ZDR 212160 cd11615 SAF_NeuB_like - cl00555
2 2ZDR 212235 cl00555 SAF superfamily - -
3 2ZDR 207079 cl00496 NeuB superfamily - -
4 2ZDR 207079 cl00496 NeuB superfamily - -
Structural Details of PDB entry 2ZDR

Structural Details of PDB entry 2ZDR

PDBid Chains Hinge Swapped Domain
2ZDR A,B A:271-277,B:271-277 A:278-349,B:278-349

Swapped-domain interface residues and interactions:

Chains Residues
A 61, 62, 63, 64, 66, 67, 70, 72, 73, 133, 134, 137, 157, 184, 185, 279, 281, 282, 284, 285, 286, 288, 289, 290, 291, 296, 311, 312, 313, 314, 315, 317, 322, 323, 325, 326, 340, 342, 349,
B 61, 62, 63, 64, 66, 67, 70, 72, 73, 133, 134, 137, 157, 184, 185, 279, 281, 282, 284, 285, 286, 288, 289, 290, 291, 296, 311, 312, 313, 314, 315, 317, 322, 323, 325, 326, 340, 342,

Non-swapped-domain interface residues and interactions:

Chains Residues
A 2, 60, 71, 79, 112, 114, 136, 138, 139, 142, 158, 159, 160, 165, 181, 183, 186, 190, 191, 192, 193, 194, 195, 196, 197, 199, 200, 220, 221, 223, 224, 227, 228, 262, 263, 266, 267, 269, 270, 272, 273, 274, 275, 276, 277,
B 2, 60, 71, 79, 112, 114, 136, 138, 139, 142, 158, 159, 160, 165, 181, 183, 186, 190, 191, 192, 193, 194, 195, 196, 197, 199, 200, 220, 221, 223, 224, 227, 228, 262, 263, 266, 267, 269, 270, 272, 273, 274, 275, 276, 277,

Swapped domains are represented using trasperent spheres.
Non-swapped part is represented using light color and cartoon representation.
Hinge region is shown in yellow color.

Mutations in critical regions:

Chains Hinge Domain swapped interface Non-swapped interface Swapped Domain
ANo mutationNo mutationNo mutationNo mutation
BNo mutationNo mutationNo mutationNo mutation

HIDE output:

Homologues found through HIDE algorithm

JMOL Visualization:

Jmol_logo            Jmol_logo            Jmol_logo

2D-plot:

A:2ZDR B:2ZDR

JOY Structural annotation for hinge hinge and swapped domain:

Hinge Swapped domain

JOY output:

ali file:2ZDR.ali
atm file:2ZDR.atm
cof file:2ZDR.cof
hbd file:2ZDR.hbd
html file:2ZDR.html
pdb file:2ZDR.pdb
ps file:2ZDR.ps
psa file:2ZDR.psa
rtf file:2ZDR.rtf
sst file:2ZDR.sst
tem file:2ZDR.tem