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Pfam Domains mapped on to the structure: 2VIC

No. Chain ID Pfam ID Pfam Description Linkout - Pfam Linkout - CDD
1 A PF01797 Transposase IS200 like PF01797 PF01797

Conserved Domain Database Superfamily Annotations: 2VIC

No. PDB ID PSSM ID CDD Accession Superfamily Short Name Linkout - CDD
1 2VIC 207217 cl00848 Y1_Tnp superfamily - -
Structural Details of PDB entry 2VIC

Structural Details of PDB entry 2VIC

PDBid Chains Hinge Swapped Domain
2VIC A,B A:116-118,B:116-118 A:119-155,B:119-155

Swapped-domain interface residues and interactions:

Chains Residues
A 57, 59, 60, 61, 66, 116, 117, 118, 119, 120, 121, 124, 125, 127, 128, 129, 131, 132, 143, 146, 150, 153, 154, 155,
B 57, 59, 60, 61, 66, 116, 117, 118, 119, 120, 121, 124, 125, 127, 128, 129, 131,

Non-swapped-domain interface residues and interactions:

Chains Residues
A 7, 12, 13, 14, 16, 17, 18, 19, 20, 56, 68, 73, 74, 77, 78, 109, 110, 111, 112, 113, 114, 115,
B 5, 7, 12, 13, 14, 16, 17, 18, 19, 20, 28, 37, 56, 64, 68, 73, 74, 77, 78, 109, 110, 111, 112, 113, 114, 115,

Swapped domains are represented using trasperent spheres.
Non-swapped part is represented using light color and cartoon representation.
Hinge region is shown in yellow color.

Mutations in critical regions:

Chains Hinge Domain swapped interface Non-swapped interface Swapped Domain
ANo mutationNo mutationNo mutationNo mutation
BNo mutationNo mutationNo mutationNo mutation

HIDE output:

Homologues found through HIDE algorithm

JMOL Visualization:

Jmol_logo            Jmol_logo            Jmol_logo

2D-plot:

A:2VIC B:2VIC

JOY Structural annotation for hinge hinge and swapped domain:

Hinge Swapped domain

JOY output:

ali file:2VIC.ali
atm file:2VIC.atm
cof file:2VIC.cof
hbd file:2VIC.hbd
html file:2VIC.html
pdb file:2VIC.pdb
ps file:2VIC.ps
psa file:2VIC.psa
rtf file:2VIC.rtf
sst file:2VIC.sst
tem file:2VIC.tem