Home BrowseSearch Help Group

Pfam Domains mapped on to the structure: 2VHG

No. Chain ID Pfam ID Pfam Description Linkout - Pfam Linkout - CDD
1 A PF01797 Transposase IS200 like PF01797 PF01797

Conserved Domain Database Superfamily Annotations: 2VHG

No. PDB ID PSSM ID CDD Accession Superfamily Short Name Linkout - CDD
1 2VHG 207217 cl00848 Y1_Tnp superfamily - -
Structural Details of PDB entry 2VHG

Structural Details of PDB entry 2VHG

PDBid Chains Hinge Swapped Domain
2VHG A,B A:116-118,B:116-118 A:119-132,B:119-132

Swapped-domain interface residues and interactions:

Chains Residues
A 28, 116, 119, 120, 124, 127, 128, 129, 131,
B 116, 119, 120, 124, 127, 128, 129, 131,

Non-swapped-domain interface residues and interactions:

Chains Residues
A 7, 11, 12, 13, 14, 16, 17, 19, 20, 22, 24, 64, 66, 73, 74, 77, 78, 108, 109, 110, 111, 112, 113, 114, 115, 117,
B 7, 11, 12, 13, 14, 16, 17, 19, 20, 22, 24, 28, 64, 66, 73, 74, 77, 78, 108, 109, 110, 111, 112, 113, 114, 115, 117,

Swapped domains are represented using trasperent spheres.
Non-swapped part is represented using light color and cartoon representation.
Hinge region is shown in yellow color.

Mutations in critical regions:

Chains Hinge Domain swapped interface Non-swapped interface Swapped Domain
ANo mutationNo mutationNo mutationNo mutation
BNo mutationNo mutationNo mutationNo mutation

HIDE output:

Homologues found through HIDE algorithm

JMOL Visualization:

Jmol_logo            Jmol_logo            Jmol_logo

2D-plot:

A:2VHG B:2VHG

JOY Structural annotation for hinge hinge and swapped domain:

Hinge Swapped domain

JOY output:

ali file:2VHG.ali
atm file:2VHG.atm
cof file:2VHG.cof
hbd file:2VHG.hbd
html file:2VHG.html
pdb file:2VHG.pdb
ps file:2VHG.ps
psa file:2VHG.psa
rtf file:2VHG.rtf
sst file:2VHG.sst
tem file:2VHG.tem