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Pfam Domains mapped on to the structure: 2QVF

No. Chain ID Pfam ID Pfam Description Linkout - Pfam Linkout - CDD
1 B PF00028 Cadherin domain PF00028 PF00028
2 B PF00028 Cadherin domain PF00028 PF00028

Conserved Domain Database Superfamily Annotations: 2QVF

No. PDB ID PSSM ID CDD Accession Superfamily Short Name Linkout - CDD
1 2QVF 206635 cd00031 CA_like - cl15786
2 2QVF 211469 cl15786 CA_like superfamily - -
3 2QVF 206637 cd11304 Cadherin_repeat - cl15786
4 2QVF 211469 cl15786 CA_like superfamily - -
Structural Details of PDB entry 2QVF

Structural Details of PDB entry 2QVF

PDBid Chains Hinge Swapped Domain
2QVF A,B A:-,B:- A:1--1,B:1--1

Swapped-domain interface residues and interactions:

Chains Residues

Non-swapped-domain interface residues and interactions:

Chains Residues
A 1, 2, 3, 5, 6, 23, 24, 25, 27, 78, 89, 90, 92, 213,
B 1, 2, 3, 5, 6, 23, 24, 25, 27, 78, 89, 90, 92,

Swapped domains are represented using trasperent spheres.
Non-swapped part is represented using light color and cartoon representation.
Hinge region is shown in yellow color.

Mutations in critical regions:

Chains Hinge Domain swapped interface Non-swapped interface Swapped Domain

HIDE output:

Homologues found through HIDE algorithm

JMOL Visualization:

Jmol_logo            Jmol_logo            Jmol_logo

2D-plot:

A:2QVF B:2QVF

JOY Structural annotation for hinge hinge and swapped domain:

Hinge Swapped domain

JOY output:

ali file:2QVF.ali
atm file:2QVF.atm
cof file:2QVF.cof
hbd file:2QVF.hbd
html file:2QVF.html
pdb file:2QVF.pdb
ps file:2QVF.ps
psa file:2QVF.psa
rtf file:2QVF.rtf
sst file:2QVF.sst
tem file:2QVF.tem