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Pfam Domains mapped on to the structure: 2QM8

No. Chain ID Pfam ID Pfam Description Linkout - Pfam Linkout - CDD
1 A PF03308 ArgK protein PF03308 PF03308
2 A PF02492 CobW/HypB/UreG, nucleotide-binding domain PF02492 PF02492
3 A PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain PF01656 PF01656

Conserved Domain Database Superfamily Annotations: 2QM8

No. PDB ID PSSM ID CDD Accession Superfamily Short Name Linkout - CDD
1 2QM8 48378 cd03114 ArgK-like - cl09099
2 2QM8 212613 cl09099 P-loop_NTPase superfamily - -
3 2QM8 212613 cl09099 P-loop_NTPase superfamily - -
Structural Details of PDB entry 2QM8

Structural Details of PDB entry 2QM8

PDBid Chains Hinge Swapped Domain
2QM8 A,B A:293-297,B:293-297 A:298-329,B:298-329

Swapped-domain interface residues and interactions:

Chains Residues
A 42, 46, 49, 273, 276, 277, 279, 281, 283, 284, 302, 306, 309, 310, 312, 313, 314, 315, 316, 317, 318, 320, 321, 323, 324, 327, 329,
B 42, 46, 49, 273, 276, 277, 281, 283, 284, 302, 306, 309, 310, 312, 314, 315, 316, 317, 318, 320, 321, 323, 324, 327,

Non-swapped-domain interface residues and interactions:

Chains Residues
A 45, 138, 141, 187, 189, 190, 192, 193, 194, 218, 219, 221, 222, 224, 225, 226, 227, 229, 285, 287, 288, 289, 292,
B 138, 141, 181, 184, 186, 187, 188, 189, 190, 192, 193, 195, 218, 222, 225, 226, 228, 285, 287, 288, 289, 291, 292,

Swapped domains are represented using trasperent spheres.
Non-swapped part is represented using light color and cartoon representation.
Hinge region is shown in yellow color.

Mutations in critical regions:

Chains Hinge Domain swapped interface Non-swapped interface Swapped Domain
ANo mutationNo mutationPHE(192)LEU, HIS(224)ARG, No mutation
BNo mutationNo mutationPHE(192)LEU, No mutation

HIDE output:

Homologues found through HIDE algorithm

JMOL Visualization:

Jmol_logo            Jmol_logo            Jmol_logo

2D-plot:

A:2QM8 B:2QM8

JOY Structural annotation for hinge hinge and swapped domain:

Hinge Swapped domain

JOY output:

ali file:2QM8.ali
atm file:2QM8.atm
cof file:2QM8.cof
hbd file:2QM8.hbd
html file:2QM8.html
pdb file:2QM8.pdb
ps file:2QM8.ps
psa file:2QM8.psa
rtf file:2QM8.rtf
sst file:2QM8.sst
tem file:2QM8.tem