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Pfam Domains mapped on to the structure: 2Q8V

No. Chain ID Pfam ID Pfam Description Linkout - Pfam Linkout - CDD
1 A PF04485 Phycobilisome degradation protein nblA PF04485 PF04485

Conserved Domain Database Superfamily Annotations: 2Q8V

No. PDB ID PSSM ID CDD Accession Superfamily Short Name Linkout - CDD
1 2Q8V 203026 cl04538 NblA superfamily - -
Structural Details of PDB entry 2Q8V

Structural Details of PDB entry 2Q8V

PDBid Chains Hinge Swapped Domain
2Q8V A,B A:29-31,B:29-31 A:8-28,B:8-28

Swapped-domain interface residues and interactions:

Chains Residues
A 8, 9, 10, 12, 16, 17, 19, 20, 23, 24, 27, 28, 36, 40, 44, 47, 48,
B 12, 13, 14, 17, 19, 20, 21, 23, 24, 27, 28, 36, 40, 48, 51, 52, 55,

Non-swapped-domain interface residues and interactions:

Chains Residues
A 30, 32, 35, 38, 39, 42, 43, 45, 46, 49, 50, 51, 52, 53, 54, 56, 57, 60,
B 30, 32, 35, 38, 39, 42, 43, 44, 45, 46, 47, 49, 50, 53, 56, 57,

Swapped domains are represented using trasperent spheres.
Non-swapped part is represented using light color and cartoon representation.
Hinge region is shown in yellow color.

Mutations in critical regions:

Chains Hinge Domain swapped interface Non-swapped interface Swapped Domain
ANo mutationNo mutationNo mutationNo mutation
BNo mutationNo mutationNo mutationNo mutation

HIDE output:

Homologues found through HIDE algorithm

JMOL Visualization:

Jmol_logo            Jmol_logo            Jmol_logo

2D-plot:

A:2Q8V B:2Q8V

JOY Structural annotation for hinge hinge and swapped domain:

Hinge Swapped domain

JOY output:

ali file:2Q8V.ali
atm file:2Q8V.atm
cof file:2Q8V.cof
hbd file:2Q8V.hbd
html file:2Q8V.html
pdb file:2Q8V.pdb
ps file:2Q8V.ps
psa file:2Q8V.psa
rtf file:2Q8V.rtf
sst file:2Q8V.sst
tem file:2Q8V.tem