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Pfam Domains mapped on to the structure: 2PKK

No. Chain ID Pfam ID Pfam Description Linkout - Pfam Linkout - CDD
1 A PF00294 pfkB family carbohydrate kinase PF00294 PF00294

Conserved Domain Database Superfamily Annotations: 2PKK

No. PDB ID PSSM ID CDD Accession Superfamily Short Name Linkout - CDD
1 2PKK 29364 cd01942 ribokinase_group_A - cl00192
2 2PKK 212177 cl00192 ribokinase_pfkB_like superfamily - -
3 2PKK 212177 cl00192 ribokinase_pfkB_like superfamily - -
Structural Details of PDB entry 2PKK

Structural Details of PDB entry 2PKK

PDBid Chains Hinge Swapped Domain
2PKK A,B A:20-24,B:20-24;A:34-38,B:34-38 A:25-33,B:25-33

Swapped-domain interface residues and interactions:

Chains Residues
A 22, 25, 26, 29, 30, 31, 32, 33, 111, 112, 197,
B 22, 25, 26, 29, 30, 31, 32, 33, 111, 112, 197,

Non-swapped-domain interface residues and interactions:

Chains Residues
A 15, 17, 18, 23, 24, 34, 35, 36, 37, 38, 39, 40, 42, 101, 103, 105, 109, 110, 113, 114, 115, 116, 117, 118, 149, 172, 173, 175, 176, 195, 196, 200, 201, 205, 225, 226, 323,
B 15, 17, 18, 23, 24, 34, 35, 36, 37, 38, 39, 40, 42, 101, 103, 105, 109, 110, 113, 114, 115, 116, 117, 118, 149, 172, 173, 175, 176, 195, 196, 200, 201, 205, 225, 226,

Swapped domains are represented using trasperent spheres.
Non-swapped part is represented using light color and cartoon representation.
Hinge region is shown in yellow color.

Mutations in critical regions:

Chains Hinge Domain swapped interface Non-swapped interface Swapped Domain
ANo mutationNo mutationNo mutationNo mutation
BNo mutationNo mutationNo mutationNo mutation
BNo mutationNo mutationNo mutationNo mutation

HIDE output:

Homologues found through HIDE algorithm

JMOL Visualization:

Jmol_logo            Jmol_logo            Jmol_logo

2D-plot:

A:2PKK B:2PKK

JOY Structural annotation for hinge hinge and swapped domain:

Hinge Swapped domain

JOY output:

ali file:2PKK.ali
atm file:2PKK.atm
cof file:2PKK.cof
hbd file:2PKK.hbd
html file:2PKK.html
pdb file:2PKK.pdb
ps file:2PKK.ps
psa file:2PKK.psa
rtf file:2PKK.rtf
sst file:2PKK.sst
tem file:2PKK.tem