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Pfam Domains mapped on to the structure: 2P1J

No. Chain ID Pfam ID Pfam Description Linkout - Pfam Linkout - CDD
1 A PF00929 Exonuclease PF00929 PF00929

Conserved Domain Database Superfamily Annotations: 2P1J

No. PDB ID PSSM ID CDD Accession Superfamily Short Name Linkout - CDD
1 2P1J 176648 cd06127 DEDDh - cl10012
2 2P1J 211457 cl10012 DnaQ_like_exo superfamily - -
Structural Details of PDB entry 2P1J

Structural Details of PDB entry 2P1J

PDBid Chains Hinge Swapped Domain
2P1J A,B A:493-500,B:493-500 A:501-520,B:501-527

Swapped-domain interface residues and interactions:

Chains Residues
A 360, 362, 377, 379, 381, 386, 393, 442, 470, 489, 501, 502, 503, 504, 505, 506, 507, 508, 509, 510, 511, 512, 513, 514, 515, 516, 517, 519, 520,
B 360, 362, 377, 379, 380, 381, 386, 393, 470, 489, 499, 501, 502, 503, 504, 505, 506, 507, 508, 509, 510, 511, 512, 513, 514, 515, 516, 519, 520, 525,

Non-swapped-domain interface residues and interactions:

Chains Residues
A 358, 383, 388, 391, 410, 411, 416, 440, 468, 473, 476, 477, 478, 485, 488, 492, 493, 494, 495, 496, 497, 498, 499, 500,
B 358, 364, 383, 388, 391, 395, 416, 419, 420, 440, 468, 473, 474, 477, 478, 485, 488, 492, 494, 496, 497, 498, 500,

Swapped domains are represented using trasperent spheres.
Non-swapped part is represented using light color and cartoon representation.
Hinge region is shown in yellow color.

Mutations in critical regions:

Chains Hinge Domain swapped interface Non-swapped interface Swapped Domain
ANo mutationNo mutationNo mutationNo mutation
BNo mutationHIS(525)-, No mutationGLU(523)-, GLY(524)-, HIS(525)-, HIS(526)-, HIS(527)-,

HIDE output:

Homologues found through HIDE algorithm

JMOL Visualization:

Jmol_logo            Jmol_logo            Jmol_logo

2D-plot:

A:2P1J B:2P1J

JOY Structural annotation for hinge hinge and swapped domain:

Hinge Swapped domain

JOY output:

ali file:2P1J.ali
atm file:2P1J.atm
cof file:2P1J.cof
hbd file:2P1J.hbd
html file:2P1J.html
pdb file:2P1J.pdb
ps file:2P1J.ps
psa file:2P1J.psa
rtf file:2P1J.rtf
sst file:2P1J.sst
tem file:2P1J.tem