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Pfam Domains mapped on to the structure: 2OQR

No. Chain ID Pfam ID Pfam Description Linkout - Pfam Linkout - CDD
1 A PF00072 Response regulator receiver domain PF00072 PF00072
2 A PF00486 Transcriptional regulatory protein, C terminal PF00486 PF00486

Gene Ontology Annotations: 2OQR

No. GO ID GO Description Linkout - AmiGO
1 GO:0006355 regulation of transcription, DNA-dependent GO:0006355

Conserved Domain Database Superfamily Annotations: 2OQR

No. PDB ID PSSM ID CDD Accession Superfamily Short Name Linkout - CDD
1 2OQR 29475 cd00383 trans_reg_C - cl00088
2 2OQR 212173 cl00088 HTH superfamily - -
3 2OQR 29071 cd00156 REC - cl09944
4 2OQR 209106 cl09944 REC superfamily - -
5 2OQR 209106 cl09944 REC superfamily - -
Structural Details of PDB entry 2OQR

Structural Details of PDB entry 2OQR

PDBid Chains Hinge Swapped Domain
2OQR A,B A:81-82,B:81-82 A:1-80,B:1-80

Swapped-domain interface residues and interactions:

Chains Residues
A 2, 13, 17, 20, 21, 23, 24, 26, 48, 50, 53, 61, 64, 65, 68, 75, 76, 77, 78, 79, 80, 93, 94, 95, 96, 97, 98, 99, 100, 101, 105, 185,
B 2, 13, 17, 20, 21, 23, 24, 26, 48, 50, 53, 61, 64, 65, 68, 75, 76, 77, 78, 79, 80, 93, 94, 95, 96, 97, 98, 99, 100, 101, 105, 185,

Non-swapped-domain interface residues and interactions:

Chains Residues
A 81, 82, 85, 92, 102, 106, 108, 109, 112, 113, 115, 116, 186, 226,
B 81, 82, 85, 92, 102, 106, 108, 109, 112, 113, 115, 116, 186,

Swapped domains are represented using trasperent spheres.
Non-swapped part is represented using light color and cartoon representation.
Hinge region is shown in yellow color.

Mutations in critical regions:

Chains Hinge Domain swapped interface Non-swapped interface Swapped Domain
ANo mutationNo mutationNo mutationNo mutation
BNo mutationNo mutationNo mutationNo mutation

HIDE output:

Homologues found through HIDE algorithm

JMOL Visualization:

Jmol_logo            Jmol_logo            Jmol_logo

2D-plot:

A:2OQR B:2OQR

JOY Structural annotation for hinge hinge and swapped domain:

Hinge Swapped domain

JOY output:

ali file:2OQR.ali
atm file:2OQR.atm
cof file:2OQR.cof
hbd file:2OQR.hbd
html file:2OQR.html
pdb file:2OQR.pdb
ps file:2OQR.ps
psa file:2OQR.psa
rtf file:2OQR.rtf
sst file:2OQR.sst
tem file:2OQR.tem