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Pfam Domains mapped on to the structure: 2I8B

No. Chain ID Pfam ID Pfam Description Linkout - Pfam Linkout - CDD
1 A PF11507 Ebola virus-specific transcription factor VP30 PF11507 PF11507

Conserved Domain Database Superfamily Annotations: 2I8B

No. PDB ID PSSM ID CDD Accession Superfamily Short Name Linkout - CDD
1 2I8B 151944 cl13024 Transcript_VP30 superfamily - -
Structural Details of PDB entry 2I8B

Structural Details of PDB entry 2I8B

PDBid Chains Hinge Swapped Domain
2I8B A,B A:248-251,B:248-251 A:252-266,B:252-266

Swapped-domain interface residues and interactions:

Chains Residues
A 140, 141, 142, 150, 169, 173, 252, 253, 255, 257, 258, 260, 261, 262, 263, 264, 265, 266,
B 141, 142, 150, 153, 169, 173, 252, 253, 257, 258, 260, 261, 262, 263, 264, 265,

Non-swapped-domain interface residues and interactions:

Chains Residues
A 143, 144, 145, 146, 147, 148, 149, 152, 153, 154, 166, 172, 176, 179, 180, 181, 185, 246, 247, 248, 249, 250, 251,
B 139, 140, 143, 144, 145, 146, 147, 148, 149, 152, 154, 166, 172, 176, 180, 181, 185, 246, 247, 248, 249, 250, 251,

Swapped domains are represented using trasperent spheres.
Non-swapped part is represented using light color and cartoon representation.
Hinge region is shown in yellow color.

Mutations in critical regions:

Chains Hinge Domain swapped interface Non-swapped interface Swapped Domain
ANo mutationGLY(140)-, ALA(141)-, No mutationNo mutation
BNo mutationALA(141)-, GLN(139)-, GLY(140)-, No mutation

HIDE output:

Homologues found through HIDE algorithm

JMOL Visualization:

Jmol_logo            Jmol_logo            Jmol_logo

2D-plot:

A:2I8B B:2I8B

JOY Structural annotation for hinge hinge and swapped domain:

Hinge Swapped domain

JOY output:

ali file:2I8B.ali
atm file:2I8B.atm
cof file:2I8B.cof
hbd file:2I8B.hbd
html file:2I8B.html
pdb file:2I8B.pdb
ps file:2I8B.ps
psa file:2I8B.psa
rtf file:2I8B.rtf
sst file:2I8B.sst
tem file:2I8B.tem