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Pfam Domains mapped on to the structure: 2DPU

No. Chain ID Pfam ID Pfam Description Linkout - Pfam Linkout - CDD
1 A PF02334 Replication terminator protein PF02334 PF02334
2 A PF03551 Transcriptional regulator PadR-like family PF03551 PF03551

Gene Ontology Annotations: 2DPU

No. GO ID GO Description Linkout - AmiGO
1 GO:0006274 DNA replication termination GO:0006274

Conserved Domain Database Superfamily Annotations: 2DPU

No. PDB ID PSSM ID CDD Accession Superfamily Short Name Linkout - CDD
1 2DPU 66058 cl03544 RTP superfamily - -
2 2DPU 66058 cl03544 RTP superfamily - -
3 2DPU 66058 cl03544 RTP superfamily - -
4 2DPU 66058 cl03544 RTP superfamily - -
Structural Details of PDB entry 2DPU

Structural Details of PDB entry 2DPU

PDBid Chains Hinge Swapped Domain
2DPU A,B A:48-53,B:48-53 A:8-47,B:8-47

Swapped-domain interface residues and interactions:

Chains Residues
A 9, 10, 11, 12, 13, 15, 18, 21, 22, 25, 44, 45, 49, 50, 51, 121,
B 9, 10, 11, 12, 13, 15, 18, 21, 22, 25, 44, 45, 49, 50, 51, 121,

Non-swapped-domain interface residues and interactions:

Chains Residues
A 48, 53, 100, 104, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 120, 122,
B 48, 53, 100, 104, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 120,

Swapped domains are represented using trasperent spheres.
Non-swapped part is represented using light color and cartoon representation.
Hinge region is shown in yellow color.

Mutations in critical regions:

Chains Hinge Domain swapped interface Non-swapped interface Swapped Domain
ANo mutationNo mutationNo mutationNo mutation
BNo mutationNo mutationNo mutationNo mutation

HIDE output:

Homologues found through HIDE algorithm

JMOL Visualization:

Jmol_logo            Jmol_logo            Jmol_logo

2D-plot:

A:2DPU B:2DPU

JOY Structural annotation for hinge hinge and swapped domain:

Hinge Swapped domain

JOY output:

ali file:2DPU.ali
atm file:2DPU.atm
cof file:2DPU.cof
hbd file:2DPU.hbd
html file:2DPU.html
pdb file:2DPU.pdb
ps file:2DPU.ps
psa file:2DPU.psa
rtf file:2DPU.rtf
sst file:2DPU.sst
tem file:2DPU.tem