Pfam Domains mapped on to the structure: 2DLB
No.
Chain ID
Pfam ID
Pfam Description
Linkout - Pfam
Linkout - CDD
1
A
PF09467
Hypothetical protein Yopt
PF09467
PF09467
Conserved Domain Database Superfamily Annotations: 2DLB
Structural Details of PDB entry 2DLB
Structural Details of PDB entry 2DLB
PDBid
Chains
Hinge
Swapped Domain
2DLB
A,B
A:2020-2023,B:2020-2023
A:2002-2019,B:2002-2019
Swapped-domain interface residues and interactions:
Chains
Residues
A
2002 , 2003 , 2004 , 2005 , 2006 , 2007 , 2008 , 2009 , 2010 , 2011 , 2012 , 2013 , 2014 , 2015 , 2016 , 2017 , 2018 , 2019 ,
B
4002 , 4003 , 4004 , 4005 , 4006 , 4007 , 4008 , 4009 , 4010 , 4011 , 4012 , 4013 , 4014 , 4015 , 4016 , 4017 , 4018 , 4019 , 4020 , 4023 , 4026 , 4055 , 4056 , 4057 , 4059 , 4061 , 4062 , 4063 , 4064 , 4065 , 4067 , 4068 , 4069 , 4070 ,
Non-swapped-domain interface residues and interactions:
Chains
Residues
A
2020 , 2021 , 2022 , 2023 , 2026 , 2030 , 2033 , 2034 , 2036 , 2037 , 2040 , 2042 , 2043 , 2044 , 2045 , 2046 , 2047 , 2048 , 2053 , 2055 , 2056 , 2057 , 2058 , 2059 , 2061 , 2062 , 2063 , 2064 , 2065 , 2066 , 2067 , 2068 , 2069 , 2070 , 2071 ,
B
4022 , 4030 , 4033 , 4034 , 4036 , 4037 , 4039 , 4040 , 4041 , 4042 , 4043 , 4044 , 4045 , 4046 , 4047 , 4053 , 4058 , 4066 ,
Swapped domains are represented using trasperent spheres.
Non-swapped part is reprented using light color and cartoon reprentation.
Hinge region is shown in yellow color.
Mutations in critical regions:
Chains
Hinge
Domain swapped interface
Non-swapped interface
Swapped Domain
A No mutation No mutation No mutation No mutation
B No mutation No mutation No mutation No mutation
HIDE output:
JMOL Visualization:
2D-plot:
JOY Structural annotation for hinge hinge and swapped domain:
JOY output: