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Pfam Domains mapped on to the structure: 2DLB

No. Chain ID Pfam ID Pfam Description Linkout - Pfam Linkout - CDD
1 A PF09467 Hypothetical protein Yopt PF09467 PF09467

Conserved Domain Database Superfamily Annotations: 2DLB

No. PDB ID PSSM ID CDD Accession Superfamily Short Name Linkout - CDD
1 2DLB 118004 cl09704 Yopt superfamily - -
Structural Details of PDB entry 2DLB

Structural Details of PDB entry 2DLB

PDBid Chains Hinge Swapped Domain
2DLB A,B A:2020-2023,B:2020-2023 A:2002-2019,B:2002-2019

Swapped-domain interface residues and interactions:

Chains Residues
A 2002, 2003, 2004, 2005, 2006, 2007, 2008, 2009, 2010, 2011, 2012, 2013, 2014, 2015, 2016, 2017, 2018, 2019,
B 4002, 4003, 4004, 4005, 4006, 4007, 4008, 4009, 4010, 4011, 4012, 4013, 4014, 4015, 4016, 4017, 4018, 4019, 4020, 4023, 4026, 4055, 4056, 4057, 4059, 4061, 4062, 4063, 4064, 4065, 4067, 4068, 4069, 4070,

Non-swapped-domain interface residues and interactions:

Chains Residues
A 2020, 2021, 2022, 2023, 2026, 2030, 2033, 2034, 2036, 2037, 2040, 2042, 2043, 2044, 2045, 2046, 2047, 2048, 2053, 2055, 2056, 2057, 2058, 2059, 2061, 2062, 2063, 2064, 2065, 2066, 2067, 2068, 2069, 2070, 2071,
B 4022, 4030, 4033, 4034, 4036, 4037, 4039, 4040, 4041, 4042, 4043, 4044, 4045, 4046, 4047, 4053, 4058, 4066,

Swapped domains are represented using trasperent spheres.
Non-swapped part is reprented using light color and cartoon reprentation.
Hinge region is shown in yellow color.

Mutations in critical regions:

Chains Hinge Domain swapped interface Non-swapped interface Swapped Domain
ANo mutationNo mutationNo mutationNo mutation
BNo mutationNo mutationNo mutationNo mutation

HIDE output:

Homologues found through HIDE algorithm

JMOL Visualization:

Jmol_logo Jmol_logo

2D-plot:

3:2DLB A:2DLB B:2DLB

JOY Structural annotation for hinge hinge and swapped domain:

Hinge Swapped domain

JOY output:

ali file:2DLB.ali
atm file:2DLB.atm
cof file:2DLB.cof
hbd file:2DLB.hbd
html file:2DLB.html
pdb file:2DLB.pdb
ps file:2DLB.ps
psa file:2DLB.psa
rtf file:2DLB.rtf
sst file:2DLB.sst
tem file:2DLB.tem