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Pfam Domains mapped on to the structure: 2DI3

No. Chain ID Pfam ID Pfam Description Linkout - Pfam Linkout - CDD
1 A PF00392 Bacterial regulatory proteins, gntR family PF00392 PF00392
2 A PF07729 FCD domain PF07729 PF07729

Gene Ontology Annotations: 2DI3

No. GO ID GO Description Linkout - AmiGO
1 GO:0005622 intracellular GO:0005622

Conserved Domain Database Superfamily Annotations: 2DI3

No. PDB ID PSSM ID CDD Accession Superfamily Short Name Linkout - CDD
1 2DI3 153418 cd07377 WHTH_GntR - cl00088
2 2DI3 212173 cl00088 HTH superfamily - -
3 2DI3 209375 cl11656 FCD superfamily - -
4 2DI3 209375 cl11656 FCD superfamily - -
Structural Details of PDB entry 2DI3

Structural Details of PDB entry 2DI3

PDBid Chains Hinge Swapped Domain
2DI3 A,B A:73-79,B:73-79 A:2-72,B:2-72

Swapped-domain interface residues and interactions:

Chains Residues
A 10, 14, 17, 18, 23, 24, 47, 50, 51, 54, 55, 57, 79, 82, 83, 86, 89, 90,
B 6, 10, 14, 17, 18, 24, 47, 50, 51, 54, 55, 57, 79, 83, 86, 89, 90,

Non-swapped-domain interface residues and interactions:

Chains Residues
A 74, 75, 76, 78, 80, 84, 85, 87, 92, 93, 97, 98, 100, 101, 104, 105, 108, 156, 157, 158, 159, 160, 162, 163, 166, 167, 232,
B 74, 75, 76, 80, 82, 84, 87, 92, 93, 97, 100, 101, 104, 105, 108, 157, 158, 159, 160, 162, 163, 167,

Swapped domains are represented using trasperent spheres.
Non-swapped part is represented using light color and cartoon representation.
Hinge region is shown in yellow color.

Mutations in critical regions:

Chains Hinge Domain swapped interface Non-swapped interface Swapped Domain
ANo mutationNo mutationNo mutationNo mutation
BNo mutationNo mutationNo mutationNo mutation

HIDE output:

Homologues found through HIDE algorithm

JMOL Visualization:

Jmol_logo            Jmol_logo            Jmol_logo

2D-plot:

A:2DI3 B:2DI3

JOY Structural annotation for hinge hinge and swapped domain:

Hinge Swapped domain

JOY output:

ali file:2DI3.ali
atm file:2DI3.atm
cof file:2DI3.cof
hbd file:2DI3.hbd
html file:2DI3.html
pdb file:2DI3.pdb
ps file:2DI3.ps
psa file:2DI3.psa
rtf file:2DI3.rtf
sst file:2DI3.sst
tem file:2DI3.tem