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Pfam Domains mapped on to the structure: 2D8D

No. Chain ID Pfam ID Pfam Description Linkout - Pfam Linkout - CDD
1 A PF01817 Chorismate mutase type II PF01817 PF01817

Conserved Domain Database Superfamily Annotations: 2D8D

No. PDB ID PSSM ID CDD Accession Superfamily Short Name Linkout - CDD
1 2D8D 207170 cl00693 CM_2 superfamily - -
Structural Details of PDB entry 2D8D

Structural Details of PDB entry 2D8D

PDBid Chains Hinge Swapped Domain
2D8D A,B A:18-22,B:18-22 A:3-17,B:3-17

Swapped-domain interface residues and interactions:

Chains Residues
A 3, 4, 5, 8, 9, 11, 12, 13, 15, 16, 17, 22, 26, 29, 33,
B 3, 4, 5, 8, 9, 11, 12, 13, 14, 15, 16, 17, 22, 26, 29, 33,

Non-swapped-domain interface residues and interactions:

Chains Residues
A 18, 19, 20, 23, 24, 25, 27, 28, 31, 32, 36, 37, 39, 40, 42, 49, 52, 53, 56, 57, 60, 62, 63, 64, 65, 66, 69, 70, 73, 74, 76, 77, 80, 81, 82,
B 18, 19, 20, 23, 24, 25, 27, 28, 31, 32, 36, 37, 40, 42, 46, 49, 56, 57, 60, 62, 63, 64, 65, 69, 70, 72, 73, 74, 76, 77, 80, 81, 83, 84,

Swapped domains are represented using trasperent spheres.
Non-swapped part is represented using light color and cartoon representation.
Hinge region is shown in yellow color.

Mutations in critical regions:

Chains Hinge Domain swapped interface Non-swapped interface Swapped Domain
ANo mutationNo mutationNo mutationNo mutation
BNo mutationNo mutationNo mutationNo mutation

HIDE output:

Homologues found through HIDE algorithm

JMOL Visualization:

Jmol_logo            Jmol_logo            Jmol_logo

2D-plot:

A:2D8D B:2D8D

JOY Structural annotation for hinge hinge and swapped domain:

Hinge Swapped domain

JOY output:

ali file:2D8D.ali
atm file:2D8D.atm
cof file:2D8D.cof
hbd file:2D8D.hbd
html file:2D8D.html
pdb file:2D8D.pdb
ps file:2D8D.ps
psa file:2D8D.psa
rtf file:2D8D.rtf
sst file:2D8D.sst
tem file:2D8D.tem