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Pfam Domains mapped on to the structure: 2CGR

No. Chain ID Pfam ID Pfam Description Linkout - Pfam Linkout - CDD
1 H PF13895 Immunoglobulin domain PF13895 PF13895

Conserved Domain Database Superfamily Annotations: 2CGR

No. PDB ID PSSM ID CDD Accession Superfamily Short Name Linkout - CDD
1 2CGR 143182 cd04981 IgV_H - cl11960
2 2CGR 212623 cl11960 Ig superfamily - -
3 2CGR 212623 cl11960 Ig superfamily - -
4 2CGR 212623 cl11960 Ig superfamily - -
Structural Details of PDB entry 2CGR

Structural Details of PDB entry 2CGR

PDBid Chains Hinge Swapped Domain
2CGR H,L H:128-134,L:124-130 H:135-214,L:131-219

Swapped-domain interface residues and interactions:

Chains Residues
H 131, 132, 140, 144, 146, 167, 168, 169, 170, 172, 174, 179, 181, 183, 211,
L 132, 136, 138, 140, 142, 143, 165, 166, 167, 168, 169, 179, 181, 183, 185, 214, 218, 219,

Non-swapped-domain interface residues and interactions:

Chains Residues
H 39, 44, 45, 47, 50, 59, 61, 95, 101, 102, 103, 104, 105, 106, 107, 108, 125, 126, 127, 128, 129, 130, 133,
L 1, 37, 39, 41, 43, 48, 49, 50, 51, 60, 92, 96, 99, 100, 101, 102, 103, 105, 119, 121, 122, 123, 124, 126, 128, 129,

Swapped domains are represented using trasperent spheres.
Non-swapped part is represented using light color and cartoon representation.
Hinge region is shown in yellow color.

Mutations in critical regions:

Chains Hinge Domain swapped interface Non-swapped interface Swapped Domain
HNo mutationNo mutationGLU(39)GLN, ASN(59)LYS, ARG(61)ASN, SER(101)ALA, SER(102)PRO, No mutation
LNo mutationNo mutationHIS(39)TYR, LEU(51)PRO, No mutation

HIDE output:

Homologues found through HIDE algorithm

JMOL Visualization:

Jmol_logo            Jmol_logo            Jmol_logo

2D-plot:

H:2CGR

JOY Structural annotation for hinge hinge and swapped domain:

Hinge Swapped domain

JOY output:

ali file:2CGR.ali
atm file:2CGR.atm
cof file:2CGR.cof
hbd file:2CGR.hbd
html file:2CGR.html
pdb file:2CGR.pdb
ps file:2CGR.ps
psa file:2CGR.psa
rtf file:2CGR.rtf
sst file:2CGR.sst
tem file:2CGR.tem