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Pfam Domains mapped on to the structure: 2AVD

No. Chain ID Pfam ID Pfam Description Linkout - Pfam Linkout - CDD
1 A PF01596 O-methyltransferase PF01596 PF01596
2 A PF12847 Methyltransferase domain PF12847 PF12847
3 A PF13578 Methyltransferase domain PF13578 PF13578

Conserved Domain Database Superfamily Annotations: 2AVD

No. PDB ID PSSM ID CDD Accession Superfamily Short Name Linkout - CDD
1 2AVD 100107 cd02440 AdoMet_MTases - cl16911
2 2AVD 212630 cl16911 AdoMet_MTases superfamily - -
3 2AVD 212630 cl16911 AdoMet_MTases superfamily - -
Structural Details of PDB entry 2AVD

Structural Details of PDB entry 2AVD

PDBid Chains Hinge Swapped Domain
2AVD A,B A:63-66,B:63-66 A:44-62,B:44-62

Swapped-domain interface residues and interactions:

Chains Residues
A 44, 45, 46, 47, 48, 53, 54, 55, 57, 58, 60, 61, 62, 217, 236, 237, 240, 247, 248, 249,
B 44, 46, 47, 48, 53, 54, 57, 58, 60, 61, 62, 217, 236, 237, 240, 247, 248, 249,

Non-swapped-domain interface residues and interactions:

Chains Residues
A 64, 92, 93, 96, 97, 99, 100, 101, 205, 214, 219, 220, 221, 245, 246, 250, 251, 252, 260, 262,
B 64, 92, 93, 96, 97, 99, 100, 101, 205, 214, 219, 220, 221, 245, 246, 250, 251, 252, 260,

Swapped domains are represented using trasperent spheres.
Non-swapped part is represented using light color and cartoon representation.
Hinge region is shown in yellow color.

Mutations in critical regions:

Chains Hinge Domain swapped interface Non-swapped interface Swapped Domain
ANo mutationNo mutationNo mutationNo mutation
BNo mutationNo mutationNo mutationNo mutation

HIDE output:

Homologues found through HIDE algorithm

JMOL Visualization:

Jmol_logo            Jmol_logo            Jmol_logo

2D-plot:

B:2AVD A:2AVD

JOY Structural annotation for hinge hinge and swapped domain:

Hinge Swapped domain

JOY output:

ali file:2AVD.ali
atm file:2AVD.atm
cof file:2AVD.cof
hbd file:2AVD.hbd
html file:2AVD.html
pdb file:2AVD.pdb
ps file:2AVD.ps
psa file:2AVD.psa
rtf file:2AVD.rtf
sst file:2AVD.sst
tem file:2AVD.tem