Pfam Domains mapped on to the structure: 1YVS

No.	Chain ID	Pfam ID	Pfam Description	Linkout - Pfam	Linkout - CDD
1	A	PF00545	ribonuclease	PF00545	PF00545

Gene Ontology Annotations: 1YVS

No.	GO ID	GO Description	Linkout - AmiGO
1	GO:0004521	endoribonuclease activity	GO:0004521

Conserved Domain Database Superfamily Annotations: 1YVS

No.	PDB ID	PSSM ID	CDD Accession	Superfamily Short Name	Linkout - CDD
1	1YVS	29493	cd00933	barnase -	cl00212
2	1YVS	206904	cl00212	microbial_RNases	superfamily - -

Structural Details of PDB entry 1YVS PDBid Chains Hinge Swapped Domain 1YVS F,A,D,C,E,B F:37-41,A:37-41,D:37-41,C:37-41,E:37-41,B:37-41 F:1-36,A:3-36,D:1-36,C:3-36,E:1-36,B:3-36 Swapped-domain interface residues and interactions: Chains Residues A 5, 6, 7, 8, 10, 11, 12, 14, 15, 18, 20, 22, 23, 24, 25, 26, 27, 30, 33, 34, 35, 36, 39, 40, 42, 45, 48, 49, 50, 51, 52, 53, 54, 76, 77, 88, 94, 96, B 5, 6, 7, 8, 10, 11, 12, 14, 15, 18, 20, 22, 23, 24, 25, 26, 27, 30, 33, 34, 35, 36, 39, 40, 42, 45, 48, 49, 50, 51, 52, 53, 54, 76, 77, 88, 94, 96, C 5, 6, 7, 8, 10, 11, 12, 14, 15, 18, 20, 22, 23, 24, 25, 26, 27, 30, 33, 34, 35, 36, 39, 40, 42, 45, 48, 49, 50, 51, 52, 53, 54, 76, 77, 88, 94, 96, Non-swapped-domain interface residues and interactions: Chains Residues A 38, 41, 44, 46, 73, 74, 75, 78, 81, 82, 83, 90, 98, 102, 109, 110, B 38, 41, 44, 46, 73, 74, 75, 78, 81, 82, 83, 90, 98, 102, 109, 110, C 38, 41, 44, 46, 73, 74, 75, 78, 81, 82, 83, 90, 98, 102, 109,

Swapped domains are represented using trasperent spheres. Non-swapped part is represented using light color and cartoon representation. Hinge region is shown in yellow color.

Mutations in critical regions:

Chains	Hinge	Domain swapped interface	Non-swapped interface	Swapped Domain
F	No mutation	No mutation	No mutation	No mutation
A	No mutation	No mutation	No mutation	No mutation
D	No mutation	No mutation	No mutation	No mutation
C	No mutation	No mutation	No mutation	No mutation
E	No mutation	No mutation	No mutation	No mutation
B	No mutation	No mutation	No mutation	No mutation

HIDE output:

Homologues found through HIDE algorithm

JMOL Visualization:

2D-plot:

A:1YVS

B:1YVS

C:1YVS

D:1YVS

E:1YVS

F:1YVS

JOY Structural annotation for hinge hinge and swapped domain:

Hinge	Swapped domain

JOY output:

ali file:	1YVS.ali
atm file:	1YVS.atm
cof file:	1YVS.cof
hbd file:	1YVS.hbd
html file:	1YVS.html
pdb file:	1YVS.pdb
ps file:	1YVS.ps
psa file:	1YVS.psa
rtf file:	1YVS.rtf
sst file:	1YVS.sst
tem file:	1YVS.tem