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Conserved Domain Database Superfamily Annotations: 1YGT

No. PDB ID PSSM ID CDD Accession Superfamily Short Name Linkout - CDD
1 1YGT 202715 cl04194 Tctex-1 superfamily - -
Structural Details of PDB entry 1YGT

Structural Details of PDB entry 1YGT

PDBid Chains Hinge Swapped Domain
1YGT A,B A:70-74,B:70-74 A:75-82,B:75-82

Swapped-domain interface residues and interactions:

Chains Residues
A 37, 38, 41, 42, 45, 46, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 75, 76, 77, 78, 79, 80, 81, 82,
B 37, 38, 41, 42, 45, 46, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 75, 76, 77, 78, 79, 80, 81, 82,

Non-swapped-domain interface residues and interactions:

Chains Residues
A 32, 34, 49, 53, 71, 72, 73, 74, 84, 107, 109, 110, 111,
B 32, 34, 49, 53, 71, 72, 73, 74, 84, 107, 109, 110,

Swapped domains are represented using trasperent spheres.
Non-swapped part is represented using light color and cartoon representation.
Hinge region is shown in yellow color.

Mutations in critical regions:

Chains Hinge Domain swapped interface Non-swapped interface Swapped Domain
ANo mutationNo mutationNo mutationNo mutation
BNo mutationNo mutationNo mutationNo mutation

HIDE output:

Homologues found through HIDE algorithm

JMOL Visualization:

Jmol_logo            Jmol_logo            Jmol_logo

2D-plot:

A:1YGT B:1YGT

JOY Structural annotation for hinge hinge and swapped domain:

Hinge Swapped domain

JOY output:

ali file:1YGT.ali
atm file:1YGT.atm
cof file:1YGT.cof
hbd file:1YGT.hbd
html file:1YGT.html
pdb file:1YGT.pdb
ps file:1YGT.ps
psa file:1YGT.psa
rtf file:1YGT.rtf
sst file:1YGT.sst
tem file:1YGT.tem