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Pfam Domains mapped on to the structure: 1YBZ

No. Chain ID Pfam ID Pfam Description Linkout - Pfam Linkout - CDD
1 A PF01817 Chorismate mutase type II PF01817 PF01817

Gene Ontology Annotations: 1YBZ

No. GO ID GO Description Linkout - AmiGO
1 GO:0046417 chorismate metabolic process GO:0046417

Conserved Domain Database Superfamily Annotations: 1YBZ

No. PDB ID PSSM ID CDD Accession Superfamily Short Name Linkout - CDD
1 1YBZ 207170 cl00693 CM_2 superfamily - -
Structural Details of PDB entry 1YBZ

Structural Details of PDB entry 1YBZ

PDBid Chains Hinge Swapped Domain
1YBZ A,B A:18-22,B:18-22 A:0-17,B:0-17

Swapped-domain interface residues and interactions:

Chains Residues
A 1, 3, 4, 7, 8, 10, 11, 12, 14, 15, 16, 17, 21, 25, 28, 32,
B 1, 3, 4, 7, 8, 10, 11, 12, 14, 15, 16, 17, 21, 25, 28, 32,

Non-swapped-domain interface residues and interactions:

Chains Residues
A 18, 19, 22, 23, 24, 26, 31, 35, 36, 39, 41, 45, 48, 55, 56, 58, 59, 61, 62, 63, 65, 66, 69, 75,
B 18, 19, 22, 23, 24, 26, 31, 35, 36, 39, 41, 45, 48, 55, 56, 58, 59, 61, 62, 63, 65, 66, 69,

Swapped domains are represented using trasperent spheres.
Non-swapped part is represented using light color and cartoon representation.
Hinge region is shown in yellow color.

Mutations in critical regions:

Chains Hinge Domain swapped interface Non-swapped interface Swapped Domain
ANo mutationNo mutationNo mutationNo mutation
BNo mutationNo mutationNo mutationNo mutation

HIDE output:

Homologues found through HIDE algorithm

JMOL Visualization:

Jmol_logo            Jmol_logo            Jmol_logo

2D-plot:

A:1YBZ B:1YBZ

JOY Structural annotation for hinge hinge and swapped domain:

Hinge Swapped domain

JOY output:

ali file:1YBZ.ali
atm file:1YBZ.atm
cof file:1YBZ.cof
hbd file:1YBZ.hbd
html file:1YBZ.html
pdb file:1YBZ.pdb
ps file:1YBZ.ps
psa file:1YBZ.psa
rtf file:1YBZ.rtf
sst file:1YBZ.sst
tem file:1YBZ.tem