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Pfam Domains mapped on to the structure: 1Y3H

No. Chain ID Pfam ID Pfam Description Linkout - Pfam Linkout - CDD
1 A PF01513 ATP-NAD kinase PF01513 PF01513

Conserved Domain Database Superfamily Annotations: 1Y3H

No. PDB ID PSSM ID CDD Accession Superfamily Short Name Linkout - CDD
1 1Y3H 207362 cl01255 DAGK_cat superfamily - -
2 1Y3H 207362 cl01255 DAGK_cat superfamily - -
Structural Details of PDB entry 1Y3H

Structural Details of PDB entry 1Y3H

PDBid Chains Hinge Swapped Domain
1Y3H A,B A:214-218,B:214-218 A:219-307,B:219-307

Swapped-domain interface residues and interactions:

Chains Residues
A 175, 181, 182, 183, 184, 185, 209, 210, 211, 212, 214, 215, 229, 231, 232, 233, 234, 235, 236, 244, 247, 267, 269, 288, 290, 291, 293, 294, 299, 300, 301, 302, 303, 304, 305, 306, 307,
B 175, 178, 180, 181, 182, 183, 184, 185, 209, 210, 211, 212, 214, 215, 227, 229, 231, 232, 233, 234, 235, 236, 244, 247, 267, 269, 271, 288, 290, 291, 293, 294, 299, 300, 301, 302, 303, 304, 305, 306,

Non-swapped-domain interface residues and interactions:

Chains Residues
A 146, 149, 177, 178, 179, 180, 204, 207, 208, 217,
B 146, 177, 204, 207, 208, 217,

Swapped domains are represented using trasperent spheres.
Non-swapped part is represented using light color and cartoon representation.
Hinge region is shown in yellow color.

Mutations in critical regions:

Chains Hinge Domain swapped interface Non-swapped interface Swapped Domain
ANo mutationILE(302)THR, No mutationILE(302)THR,
BNo mutationILE(302)THR, No mutationILE(302)THR,

HIDE output:

Homologues found through HIDE algorithm

JMOL Visualization:

Jmol_logo            Jmol_logo            Jmol_logo

2D-plot:

A:1Y3H B:1Y3H

JOY Structural annotation for hinge hinge and swapped domain:

Hinge Swapped domain

JOY output:

ali file:1Y3H.ali
atm file:1Y3H.atm
cof file:1Y3H.cof
hbd file:1Y3H.hbd
html file:1Y3H.html
pdb file:1Y3H.pdb
ps file:1Y3H.ps
psa file:1Y3H.psa
rtf file:1Y3H.rtf
sst file:1Y3H.sst
tem file:1Y3H.tem