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Pfam Domains mapped on to the structure: 1XML

No. Chain ID Pfam ID Pfam Description Linkout - Pfam Linkout - CDD
1 A PF05652 Scavenger mRNA decapping enzyme (DcpS) N-terminal PF05652 PF05652
2 A PF11969 Scavenger mRNA decapping enzyme C-term binding PF11969 PF11969

Gene Ontology Annotations: 1XML

No. GO ID GO Description Linkout - AmiGO
1 GO:0000290 deadenylation-dependent decapping of nuclear-transcribed mRNA GO:0000290

Conserved Domain Database Superfamily Annotations: 1XML

No. PDB ID PSSM ID CDD Accession Superfamily Short Name Linkout - CDD
1 1XML 147681 cl12312 DcpS superfamily - -
2 1XML 206916 HIT_like superfamily C -
3 1XML 206916 HIT_like superfamily C -
Structural Details of PDB entry 1XML

Structural Details of PDB entry 1XML

PDBid Chains Hinge Swapped Domain
1XML A,B A:143-149,B:143-149 A:38-142,B:38-142

Swapped-domain interface residues and interactions:

Chains Residues
A 38, 39, 40, 41, 42, 43, 46, 47, 49, 52, 55, 57, 58, 59, 60, 62, 64, 82, 84, 85, 86, 87, 88, 89, 91, 94, 95, 98, 99, 101, 102, 103, 104, 112, 113, 114, 115, 116, 117, 118, 119, 120, 122, 124, 125, 126, 127, 128, 129, 130, 131, 132, 133, 134, 139,
B 40, 41, 42, 43, 46, 47, 49, 52, 55, 57, 58, 59, 60, 62, 64, 82, 84, 85, 86, 87, 88, 89, 91, 94, 95, 98, 99, 101, 102, 103, 104, 105, 106, 112, 113, 114, 115, 116, 117, 118, 119, 120, 122, 124, 125, 126, 127, 128, 129, 130, 131, 132, 133, 134, 139,

Non-swapped-domain interface residues and interactions:

Chains Residues
A 145, 147, 148, 149, 150, 152, 261, 262, 263, 264, 283, 284, 285, 297, 299, 300, 303, 304, 307, 315, 316, 318, 332,
B 143, 145, 148, 149, 150, 152, 259, 261, 262, 263, 264, 283, 284, 293, 297, 299, 300, 303, 304, 307, 315, 316, 318, 332, 336,

Swapped domains are represented using trasperent spheres.
Non-swapped part is represented using light color and cartoon representation.
Hinge region is shown in yellow color.

Mutations in critical regions:

Chains Hinge Domain swapped interface Non-swapped interface Swapped Domain
ANo mutationNo mutationNo mutationNo mutation
BNo mutationNo mutationNo mutationNo mutation

HIDE output:

Homologues found through HIDE algorithm

JMOL Visualization:

Jmol_logo            Jmol_logo            Jmol_logo

2D-plot:

A:1XML B:1XML

JOY Structural annotation for hinge hinge and swapped domain:

Hinge Swapped domain

JOY output:

ali file:1XML.ali
atm file:1XML.atm
cof file:1XML.cof
hbd file:1XML.hbd
html file:1XML.html
pdb file:1XML.pdb
ps file:1XML.ps
psa file:1XML.psa
rtf file:1XML.rtf
sst file:1XML.sst
tem file:1XML.tem