Pfam Domains mapped on to the structure: 1XML
No.
Chain ID
Pfam ID
Pfam Description
Linkout - Pfam
Linkout - CDD
1
A
PF05652
Scavenger mRNA decapping enzyme (DcpS) N-terminal
PF05652
PF05652
2
A
PF11969
Scavenger mRNA decapping enzyme C-term binding
PF11969
PF11969
Gene Ontology Annotations: 1XML
No.
GO ID
GO Description
Linkout - AmiGO
1
GO:0000290
deadenylation-dependent decapping of nuclear-transcribed mRNA
GO:0000290
Conserved Domain Database Superfamily Annotations: 1XML
Structural Details of PDB entry 1XML
Structural Details of PDB entry 1XML
PDBid
Chains
Hinge
Swapped Domain
1XML
A,B
A:143-149,B:143-149
A:38-142,B:38-142
Swapped-domain interface residues and interactions:
Chains
Residues
A
38 , 39 , 40 , 41 , 42 , 43 , 46 , 47 , 49 , 52 , 55 , 57 , 58 , 59 , 60 , 62 , 64 , 82 , 84 , 85 , 86 , 87 , 88 , 89 , 91 , 94 , 95 , 98 , 99 , 101 , 102 , 103 , 104 , 112 , 113 , 114 , 115 , 116 , 117 , 118 , 119 , 120 , 122 , 124 , 125 , 126 , 127 , 128 , 129 , 130 , 131 , 132 , 133 , 134 , 139 ,
B
40 , 41 , 42 , 43 , 46 , 47 , 49 , 52 , 55 , 57 , 58 , 59 , 60 , 62 , 64 , 82 , 84 , 85 , 86 , 87 , 88 , 89 , 91 , 94 , 95 , 98 , 99 , 101 , 102 , 103 , 104 , 105 , 106 , 112 , 113 , 114 , 115 , 116 , 117 , 118 , 119 , 120 , 122 , 124 , 125 , 126 , 127 , 128 , 129 , 130 , 131 , 132 , 133 , 134 , 139 ,
Non-swapped-domain interface residues and interactions:
Chains
Residues
A
145 , 147 , 148 , 149 , 150 , 152 , 261 , 262 , 263 , 264 , 283 , 284 , 285 , 297 , 299 , 300 , 303 , 304 , 307 , 315 , 316 , 318 , 332 ,
B
143 , 145 , 148 , 149 , 150 , 152 , 259 , 261 , 262 , 263 , 264 , 283 , 284 , 293 , 297 , 299 , 300 , 303 , 304 , 307 , 315 , 316 , 318 , 332 , 336 ,
Swapped domains are represented using trasperent spheres.
Non-swapped part is represented using light color and cartoon representation.
Hinge region is shown in yellow color.
Mutations in critical regions:
Chains
Hinge
Domain swapped interface
Non-swapped interface
Swapped Domain
A No mutation No mutation No mutation No mutation
B No mutation No mutation No mutation No mutation
HIDE output:
JMOL Visualization:
2D-plot:
JOY Structural annotation for hinge hinge and swapped domain:
JOY output: