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Pfam Domains mapped on to the structure: 1VPZ

No. Chain ID Pfam ID Pfam Description Linkout - Pfam Linkout - CDD
1 A PF02599 Global regulator protein family PF02599 PF02599

Conserved Domain Database Superfamily Annotations: 1VPZ

No. PDB ID PSSM ID CDD Accession Superfamily Short Name Linkout - CDD
1 1VPZ 207158 cl00670 CsrA superfamily - -
Structural Details of PDB entry 1VPZ

Structural Details of PDB entry 1VPZ

PDBid Chains Hinge Swapped Domain
1VPZ A,B A:37-39,B:37-39 A:40-61,B:40-61

Swapped-domain interface residues and interactions:

Chains Residues
A 11, 12, 14, 15, 40, 41, 42, 43, 44, 45, 46, 48, 55,
B 11, 12, 14, 15, 40, 41, 42, 43, 44, 45, 46, 48,

Non-swapped-domain interface residues and interactions:

Chains Residues
A 1, 0, 2, 3, 4, 5, 6, 7, 8, 16, 17, 18, 19, 20, 22, 23, 25, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38,
B 2, 1, 0, 2, 3, 4, 5, 6, 7, 8, 10, 16, 18, 20, 22, 23, 25, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 38,

Swapped domains are represented using trasperent spheres.
Non-swapped part is represented using light color and cartoon representation.
Hinge region is shown in yellow color.

Mutations in critical regions:

Chains Hinge Domain swapped interface Non-swapped interface Swapped Domain
ANo mutationNo mutationNo mutationNo mutation
BNo mutationNo mutationNo mutationNo mutation

HIDE output:

Homologues found through HIDE algorithm

JMOL Visualization:

Jmol_logo            Jmol_logo            Jmol_logo

2D-plot:

A:1VPZ B:1VPZ

JOY Structural annotation for hinge hinge and swapped domain:

Hinge Swapped domain

JOY output:

ali file:1VPZ.ali
atm file:1VPZ.atm
cof file:1VPZ.cof
hbd file:1VPZ.hbd
html file:1VPZ.html
pdb file:1VPZ.pdb
ps file:1VPZ.ps
psa file:1VPZ.psa
rtf file:1VPZ.rtf
sst file:1VPZ.sst
tem file:1VPZ.tem