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Pfam Domains mapped on to the structure: 1VM7

No. Chain ID Pfam ID Pfam Description Linkout - Pfam Linkout - CDD
1 A PF00294 pfkB family carbohydrate kinase PF00294 PF00294
2 A PF08543 Phosphomethylpyrimidine kinase PF08543 PF08543

Conserved Domain Database Superfamily Annotations: 1VM7

No. PDB ID PSSM ID CDD Accession Superfamily Short Name Linkout - CDD
1 1VM7 29358 cd01174 ribokinase - cl00192
2 1VM7 212177 cl00192 ribokinase_pfkB_like superfamily - -
3 1VM7 212177 cl00192 ribokinase_pfkB_like superfamily - -
Structural Details of PDB entry 1VM7

Structural Details of PDB entry 1VM7

PDBid Chains Hinge Swapped Domain
1VM7 A,B A:17-19,B:17-19;A:30-32,B:30-32 A:20-29,B:20-29

Swapped-domain interface residues and interactions:

Chains Residues
A 22, 23, 25, 26, 27, 28, 29, 103, 104, 105, 106, 107, 108,
B 22, 23, 25, 26, 27, 28, 29, 103, 104, 105, 106, 107, 108,

Non-swapped-domain interface residues and interactions:

Chains Residues
A 17, 30, 31, 34, 66, 67, 68, 90, 93, 95, 97, 109, 110, 299,
B 17, 30, 31, 34, 66, 67, 68, 90, 93, 95, 97, 109, 110,

Swapped domains are represented using trasperent spheres.
Non-swapped part is represented using light color and cartoon representation.
Hinge region is shown in yellow color.

Mutations in critical regions:

Chains Hinge Domain swapped interface Non-swapped interface Swapped Domain
ANo mutationNo mutationNo mutationNo mutation
BNo mutationNo mutationNo mutationNo mutation
BNo mutationNo mutationNo mutationNo mutation

HIDE output:

Homologues found through HIDE algorithm

JMOL Visualization:

Jmol_logo            Jmol_logo            Jmol_logo

2D-plot:

B:1VM7 A:1VM7

JOY Structural annotation for hinge hinge and swapped domain:

Hinge Swapped domain

JOY output:

ali file:1VM7.ali
atm file:1VM7.atm
cof file:1VM7.cof
hbd file:1VM7.hbd
html file:1VM7.html
pdb file:1VM7.pdb
ps file:1VM7.ps
psa file:1VM7.psa
rtf file:1VM7.rtf
sst file:1VM7.sst
tem file:1VM7.tem