Pfam Domains mapped on to the structure: 1VLR
No.
Chain ID
Pfam ID
Pfam Description
Linkout - Pfam
Linkout - CDD
1
A
PF05652
Scavenger mRNA decapping enzyme (DcpS) N-terminal
PF05652
PF05652
2
A
PF11969
Scavenger mRNA decapping enzyme C-term binding
PF11969
PF11969
Conserved Domain Database Superfamily Annotations: 1VLR
Structural Details of PDB entry 1VLR
Structural Details of PDB entry 1VLR
PDBid
Chains
Hinge
Swapped Domain
1VLR
A,B
A:86-90,B:86-90
A:38-85,B:39-85
Swapped-domain interface residues and interactions:
Chains
Residues
A
39 , 40 , 41 , 42 , 45 , 46 , 48 , 51 , 54 , 56 , 57 , 58 , 59 , 61 , 63 , 81 , 83 , 84 , 85 , 86 , 87 , 88 , 94 , 97 , 98 , 100 , 103 , 104 ,
B
39 , 40 , 41 , 42 , 46 , 47 , 48 , 51 , 54 , 56 , 57 , 58 , 59 , 61 , 63 , 81 , 83 , 84 , 85 , 86 , 87 , 88 , 94 , 97 , 98 , 99 , 100 , 103 ,
Non-swapped-domain interface residues and interactions:
Chains
Residues
A
90 , 93 , 101 , 102 , 105 , 111 , 112 , 113 , 114 , 115 , 116 , 117 , 118 , 119 , 121 , 123 , 124 , 125 , 126 , 127 , 128 , 129 , 130 , 131 , 132 , 133 , 138 , 147 , 148 , 149 , 151 , 260 , 261 , 262 , 263 , 282 , 283 , 285 , 289 , 290 , 291 , 292 , 294 , 295 , 296 , 298 , 299 , 302 , 303 , 306 , 314 , 315 , 317 , 331 , 337 ,
B
90 , 93 , 96 , 101 , 102 , 105 , 111 , 112 , 113 , 114 , 115 , 116 , 117 , 118 , 119 , 121 , 124 , 125 , 126 , 127 , 128 , 129 , 130 , 131 , 132 , 133 , 138 , 147 , 148 , 149 , 151 , 260 , 261 , 262 , 263 , 282 , 283 , 285 , 289 , 290 , 291 , 292 , 294 , 295 , 296 , 298 , 299 , 302 , 303 , 306 , 314 , 315 , 317 , 331 ,
Swapped domains are represented using trasperent spheres.
Non-swapped part is represented using light color and cartoon representation.
Hinge region is shown in yellow color.
Mutations in critical regions:
Chains
Hinge
Domain swapped interface
Non-swapped interface
Swapped Domain
A No mutation No mutation No mutation No mutation
B No mutation No mutation No mutation No mutation
HIDE output:
JMOL Visualization:
2D-plot:
JOY Structural annotation for hinge hinge and swapped domain:
JOY output: