Home BrowseSearch Help Group

Pfam Domains mapped on to the structure: 1VLR

No. Chain ID Pfam ID Pfam Description Linkout - Pfam Linkout - CDD
1 A PF05652 Scavenger mRNA decapping enzyme (DcpS) N-terminal PF05652 PF05652
2 A PF11969 Scavenger mRNA decapping enzyme C-term binding PF11969 PF11969

Conserved Domain Database Superfamily Annotations: 1VLR

No. PDB ID PSSM ID CDD Accession Superfamily Short Name Linkout - CDD
1 1VLR 147681 cl12312 DcpS superfamily - -
2 1VLR 206916 HIT_like superfamily C -
3 1VLR 206916 HIT_like superfamily C -
Structural Details of PDB entry 1VLR

Structural Details of PDB entry 1VLR

PDBid Chains Hinge Swapped Domain
1VLR A,B A:86-90,B:86-90 A:38-85,B:39-85

Swapped-domain interface residues and interactions:

Chains Residues
A 39, 40, 41, 42, 45, 46, 48, 51, 54, 56, 57, 58, 59, 61, 63, 81, 83, 84, 85, 86, 87, 88, 94, 97, 98, 100, 103, 104,
B 39, 40, 41, 42, 46, 47, 48, 51, 54, 56, 57, 58, 59, 61, 63, 81, 83, 84, 85, 86, 87, 88, 94, 97, 98, 99, 100, 103,

Non-swapped-domain interface residues and interactions:

Chains Residues
A 90, 93, 101, 102, 105, 111, 112, 113, 114, 115, 116, 117, 118, 119, 121, 123, 124, 125, 126, 127, 128, 129, 130, 131, 132, 133, 138, 147, 148, 149, 151, 260, 261, 262, 263, 282, 283, 285, 289, 290, 291, 292, 294, 295, 296, 298, 299, 302, 303, 306, 314, 315, 317, 331, 337,
B 90, 93, 96, 101, 102, 105, 111, 112, 113, 114, 115, 116, 117, 118, 119, 121, 124, 125, 126, 127, 128, 129, 130, 131, 132, 133, 138, 147, 148, 149, 151, 260, 261, 262, 263, 282, 283, 285, 289, 290, 291, 292, 294, 295, 296, 298, 299, 302, 303, 306, 314, 315, 317, 331,

Swapped domains are represented using trasperent spheres.
Non-swapped part is represented using light color and cartoon representation.
Hinge region is shown in yellow color.

Mutations in critical regions:

Chains Hinge Domain swapped interface Non-swapped interface Swapped Domain
ANo mutationNo mutationNo mutationNo mutation
BNo mutationNo mutationNo mutationNo mutation

HIDE output:

Homologues found through HIDE algorithm

JMOL Visualization:

Jmol_logo            Jmol_logo            Jmol_logo

2D-plot:

A:1VLR B:1VLR

JOY Structural annotation for hinge hinge and swapped domain:

Hinge Swapped domain

JOY output:

ali file:1VLR.ali
atm file:1VLR.atm
cof file:1VLR.cof
hbd file:1VLR.hbd
html file:1VLR.html
pdb file:1VLR.pdb
ps file:1VLR.ps
psa file:1VLR.psa
rtf file:1VLR.rtf
sst file:1VLR.sst
tem file:1VLR.tem