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Pfam Domains mapped on to the structure: 1VLA

No. Chain ID Pfam ID Pfam Description Linkout - Pfam Linkout - CDD
1 A PF02566 OsmC-like protein PF02566 PF02566

Conserved Domain Database Superfamily Annotations: 1VLA

No. PDB ID PSSM ID CDD Accession Superfamily Short Name Linkout - CDD
1 1VLA 212240 cl00767 OsmC superfamily - -
Structural Details of PDB entry 1VLA

Structural Details of PDB entry 1VLA

PDBid Chains Hinge Swapped Domain
1VLA A,B A:19-24,B:19-24 A:0-18,B:0-18

Swapped-domain interface residues and interactions:

Chains Residues
A 0, 2, 3, 4, 5, 8, 11, 13, 15, 16, 17, 36, 40, 44, 48, 69, 70, 71, 72, 73, 74, 75, 76,
B 0, 2, 3, 4, 5, 8, 11, 13, 15, 16, 17, 36, 40, 48, 69, 70, 71, 72, 73, 74, 75, 76,

Non-swapped-domain interface residues and interactions:

Chains Residues
A 4, 3, 2, 1, 19, 21, 29, 30, 33, 34, 35, 37, 38, 39, 41, 42, 45, 49, 51, 55, 56, 59, 64, 68, 77, 78, 82, 83, 84, 85, 86, 116, 117, 118, 121, 122, 123, 124, 125, 138,
B 3, 1, 19, 21, 29, 30, 33, 34, 35, 37, 38, 39, 41, 42, 44, 45, 49, 51, 55, 56, 59, 64, 68, 77, 78, 80, 82, 83, 84, 85, 86, 116, 117, 118, 121, 122, 123, 124, 125,

Swapped domains are represented using trasperent spheres.
Non-swapped part is represented using light color and cartoon representation.
Hinge region is shown in yellow color.

Mutations in critical regions:

Chains Hinge Domain swapped interface Non-swapped interface Swapped Domain
ANo mutationNo mutationNo mutationNo mutation
BNo mutationNo mutationNo mutationNo mutation

HIDE output:

Homologues found through HIDE algorithm

JMOL Visualization:

Jmol_logo            Jmol_logo            Jmol_logo

2D-plot:

A:1VLA B:1VLA

JOY Structural annotation for hinge hinge and swapped domain:

Hinge Swapped domain

JOY output:

ali file:1VLA.ali
atm file:1VLA.atm
cof file:1VLA.cof
hbd file:1VLA.hbd
html file:1VLA.html
pdb file:1VLA.pdb
ps file:1VLA.ps
psa file:1VLA.psa
rtf file:1VLA.rtf
sst file:1VLA.sst
tem file:1VLA.tem