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Pfam Domains mapped on to the structure: 1VKE

No. Chain ID Pfam ID Pfam Description Linkout - Pfam Linkout - CDD
1 A PF02627 Carboxymuconolactone decarboxylase family PF02627 PF02627

Conserved Domain Database Superfamily Annotations: 1VKE

No. PDB ID PSSM ID CDD Accession Superfamily Short Name Linkout - CDD
1 1VKE 212222 cl00460 CMD superfamily - -
Structural Details of PDB entry 1VKE

Structural Details of PDB entry 1VKE

PDBid Chains Hinge Swapped Domain
1VKE A,B A:57-58,B:57-58 A:4-56,B:21-56

Swapped-domain interface residues and interactions:

Chains Residues
A 9, 13, 16, 20, 21, 22, 24, 25, 28, 29, 32, 81, 85, 93,
B 21, 22, 24, 25, 28, 29, 32,
E 81, 85, 93, 100,

Non-swapped-domain interface residues and interactions:

Chains Residues
A 57, 58, 59, 61, 62, 88, 89, 92, 94, 96, 97, 99, 101, 121,
B 57, 58, 59, 61, 62, 81, 85, 88, 89, 92, 93, 94, 96, 97, 99, 100, 101, 103, 107, 121,
E 9, 13, 16, 20, 22, 24, 25, 28, 29, 32, 57, 58, 59, 61, 62, 88, 89, 92, 94, 96, 97, 99, 103,

Swapped domains are represented using trasperent spheres.
Non-swapped part is represented using light color and cartoon representation.
Hinge region is shown in yellow color.

Mutations in critical regions:

Chains Hinge Domain swapped interface Non-swapped interface Swapped Domain
ANo mutationNo mutationNo mutationNo mutation
BNo mutationNo mutationNo mutationNo mutation

HIDE output:

Homologues found through HIDE algorithm

JMOL Visualization:

Jmol_logo            Jmol_logo            Jmol_logo

2D-plot:

A:1VKE E:1VKE

JOY Structural annotation for hinge hinge and swapped domain:

Hinge Swapped domain

JOY output:

ali file:1VKE.ali
atm file:1VKE.atm
cof file:1VKE.cof
hbd file:1VKE.hbd
html file:1VKE.html
pdb file:1VKE.pdb
ps file:1VKE.ps
psa file:1VKE.psa
rtf file:1VKE.rtf
sst file:1VKE.sst
tem file:1VKE.tem