Home BrowseSearch Help Group

Pfam Domains mapped on to the structure: 1VK8

No. Chain ID Pfam ID Pfam Description Linkout - Pfam Linkout - CDD
1 A PF01910 Domain of unknown function DUF77 PF01910 PF01910

Conserved Domain Database Superfamily Annotations: 1VK8

No. PDB ID PSSM ID CDD Accession Superfamily Short Name Linkout - CDD
1 1VK8 206972 cl00307 DUF77 superfamily - -
Structural Details of PDB entry 1VK8

Structural Details of PDB entry 1VK8

PDBid Chains Hinge Swapped Domain
1VK8 A,D,C,B A:80-82,D:80-82,C:80-82,B:80-82 A:83-94,D:83-94,C:83-94,B:83-94

Swapped-domain interface residues and interactions:

Chains Residues
A 40, 41, 84, 88, 89, 90, 92, 93, 94,
B 84, 94,
C 39, 40, 41, 84, 88, 89, 90, 92, 93,

Non-swapped-domain interface residues and interactions:

Chains Residues
A 7, 9, 16, 20, 24, 27, 28, 38, 39, 42, 43, 45, 49, 50, 51, 55, 57, 58, 61, 62, 65, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81,
B 9, 11, 12, 13, 14, 15, 16, 19, 20, 50, 51, 55, 57, 58, 61, 62, 65, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81,
C 7, 9, 11, 13, 14, 15, 16, 19, 20, 24, 27, 38, 42, 43, 45, 69, 70, 72, 74, 76, 78, 80,

Swapped domains are represented using trasperent spheres.
Non-swapped part is represented using light color and cartoon representation.
Hinge region is shown in yellow color.

Mutations in critical regions:

Chains Hinge Domain swapped interface Non-swapped interface Swapped Domain
ANo mutationNo mutationNo mutationNo mutation
DNo mutationNo mutationNo mutationNo mutation
CNo mutationNo mutationNo mutationNo mutation
BNo mutationNo mutationNo mutationNo mutation

HIDE output:

Homologues found through HIDE algorithm

JMOL Visualization:

Jmol_logo            Jmol_logo            Jmol_logo

2D-plot:

A:1VK8 B:1VK8 C:1VK8 D:1VK8

JOY Structural annotation for hinge hinge and swapped domain:

Hinge Swapped domain

JOY output:

ali file:1VK8.ali
atm file:1VK8.atm
cof file:1VK8.cof
hbd file:1VK8.hbd
html file:1VK8.html
pdb file:1VK8.pdb
ps file:1VK8.ps
psa file:1VK8.psa
rtf file:1VK8.rtf
sst file:1VK8.sst
tem file:1VK8.tem