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Pfam Domains mapped on to the structure: 1VJE

No. Chain ID Pfam ID Pfam Description Linkout - Pfam Linkout - CDD
1 A PF02664 S-Ribosylhomocysteinase (LuxS) PF02664 PF02664

Gene Ontology Annotations: 1VJE

No. GO ID GO Description Linkout - AmiGO
1 GO:0009372 quorum sensing GO:0009372

Conserved Domain Database Superfamily Annotations: 1VJE

No. PDB ID PSSM ID CDD Accession Superfamily Short Name Linkout - CDD
1 1VJE 207201 cl00802 LuxS superfamily - -
Structural Details of PDB entry 1VJE

Structural Details of PDB entry 1VJE

PDBid Chains Hinge Swapped Domain
1VJE A,B A:20-22,B:20-22 A:8-19,B:8-19

Swapped-domain interface residues and interactions:

Chains Residues
A 8, 10, 14, 15, 119, 122, 123, 124, 125, 126,
B 10, 14, 15, 119, 122, 123, 124, 125, 126,

Non-swapped-domain interface residues and interactions:

Chains Residues
A 28, 30, 31, 32, 33, 34, 36, 38, 47, 50, 53, 57, 60, 61, 64, 65, 68, 74, 75, 76, 78, 79, 81, 83, 84, 87, 89, 91, 118, 127, 129, 130, 156,
B 7, 28, 29, 30, 31, 32, 33, 34, 36, 38, 47, 50, 53, 57, 60, 61, 64, 68, 73, 74, 75, 76, 78, 79, 81, 83, 84, 87, 89, 91, 118, 127, 129, 130,

Swapped domains are represented using trasperent spheres.
Non-swapped part is represented using light color and cartoon representation.
Hinge region is shown in yellow color.

Mutations in critical regions:

Chains Hinge Domain swapped interface Non-swapped interface Swapped Domain
ANo mutationNo mutationNo mutationNo mutation
BNo mutationNo mutationNo mutationNo mutation

HIDE output:

Homologues found through HIDE algorithm

JMOL Visualization:

Jmol_logo            Jmol_logo            Jmol_logo

2D-plot:

A:1VJE B:1VJE

JOY Structural annotation for hinge hinge and swapped domain:

Hinge Swapped domain

JOY output:

ali file:1VJE.ali
atm file:1VJE.atm
cof file:1VJE.cof
hbd file:1VJE.hbd
html file:1VJE.html
pdb file:1VJE.pdb
ps file:1VJE.ps
psa file:1VJE.psa
rtf file:1VJE.rtf
sst file:1VJE.sst
tem file:1VJE.tem