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Pfam Domains mapped on to the structure: 1VI0

No. Chain ID Pfam ID Pfam Description Linkout - Pfam Linkout - CDD
1 A PF00440 Bacterial regulatory proteins, tetR family PF00440 PF00440
2 A PF08359 YsiA-like protein, C-terminal region PF08359 PF08359

Conserved Domain Database Superfamily Annotations: 1VI0

No. PDB ID PSSM ID CDD Accession Superfamily Short Name Linkout - CDD
1 1VI0 116940 cl07104 TetR_C_4 superfamily - -
2 1VI0 212173 cl00088 HTH superfamily - -
3 1VI0 212173 cl00088 HTH superfamily - -
Structural Details of PDB entry 1VI0

Structural Details of PDB entry 1VI0

PDBid Chains Hinge Swapped Domain
1VI0 A,B A:189-190,B:189-190 A:191-194,B:191-194

Swapped-domain interface residues and interactions:

Chains Residues
A 142, 143, 144, 187, 188, 189, 191, 192, 193, 194,
B 141, 142, 143, 144, 145, 187, 188, 189, 191, 192,

Non-swapped-domain interface residues and interactions:

Chains Residues
A 23, 25, 80, 83, 106, 107, 109, 111, 112, 113, 116, 141, 147, 151, 152, 154, 156, 157, 158, 159, 162, 163, 165, 166, 179, 182, 183, 186, 190,
B 22, 23, 25, 26, 83, 102, 106, 107, 109, 111, 116, 147, 151, 152, 154, 156, 158, 159, 162, 163, 165, 166, 168, 179, 182, 183, 186, 190,

Swapped domains are represented using trasperent spheres.
Non-swapped part is represented using light color and cartoon representation.
Hinge region is shown in yellow color.

Mutations in critical regions:

Chains Hinge Domain swapped interface Non-swapped interface Swapped Domain
ANo mutationNo mutationNo mutationNo mutation
BNo mutationNo mutationNo mutationNo mutation

HIDE output:

Homologues found through HIDE algorithm

JMOL Visualization:

Jmol_logo            Jmol_logo            Jmol_logo

2D-plot:

A:1VI0 B:1VI0

JOY Structural annotation for hinge hinge and swapped domain:

Hinge Swapped domain

JOY output:

ali file:1VI0.ali
atm file:1VI0.atm
cof file:1VI0.cof
hbd file:1VI0.hbd
html file:1VI0.html
pdb file:1VI0.pdb
ps file:1VI0.ps
psa file:1VI0.psa
rtf file:1VI0.rtf
sst file:1VI0.sst
tem file:1VI0.tem