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Pfam Domains mapped on to the structure: 1VHZ

No. Chain ID Pfam ID Pfam Description Linkout - Pfam Linkout - CDD
1 A PF00293 NUDIX domain PF00293 PF00293

Conserved Domain Database Superfamily Annotations: 1VHZ

No. PDB ID PSSM ID CDD Accession Superfamily Short Name Linkout - CDD
1 1VHZ 72882 cd03424 ADPRase_NUDT5 - cl00447
2 1VHZ 212606 cl00447 Nudix_Hydrolase superfamily - -
3 1VHZ 212606 cl00447 Nudix_Hydrolase superfamily - -
Structural Details of PDB entry 1VHZ

Structural Details of PDB entry 1VHZ

PDBid Chains Hinge Swapped Domain
1VHZ A,B A:45-47,B:45-47 A:2-44,B:2-44

Swapped-domain interface residues and interactions:

Chains Residues
A 5, 6, 7, 8, 10, 16, 17, 18, 19, 20, 21, 22, 24, 29, 31, 32, 33, 35, 37, 38, 39, 40, 41, 42, 44, 68, 69, 72, 142,
B 5, 6, 7, 8, 10, 16, 17, 18, 19, 20, 21, 22, 24, 29, 31, 32, 33, 35, 37, 38, 39, 40, 41, 42, 44, 69, 142,

Non-swapped-domain interface residues and interactions:

Chains Residues
A 64, 66, 67, 70, 71, 73, 74, 111, 113, 114, 115, 116, 117, 118, 119, 120, 121, 123, 140, 143, 144, 146, 159, 165, 166, 167, 168, 170, 171, 174, 175, 177, 178, 185,
B 64, 66, 67, 68, 70, 71, 72, 73, 74, 111, 113, 114, 115, 116, 117, 118, 119, 120, 121, 123, 140, 143, 144, 146, 159, 165, 166, 167, 168, 170, 171, 174, 175, 177, 178,

Swapped domains are represented using trasperent spheres.
Non-swapped part is represented using light color and cartoon representation.
Hinge region is shown in yellow color.

Mutations in critical regions:

Chains Hinge Domain swapped interface Non-swapped interface Swapped Domain
ANo mutationNo mutationNo mutationNo mutation
BNo mutationNo mutationNo mutationNo mutation

HIDE output:

Homologues found through HIDE algorithm

JMOL Visualization:

Jmol_logo            Jmol_logo            Jmol_logo

2D-plot:

A:1VHZ B:1VHZ

JOY Structural annotation for hinge hinge and swapped domain:

Hinge Swapped domain

JOY output:

ali file:1VHZ.ali
atm file:1VHZ.atm
cof file:1VHZ.cof
hbd file:1VHZ.hbd
html file:1VHZ.html
pdb file:1VHZ.pdb
ps file:1VHZ.ps
psa file:1VHZ.psa
rtf file:1VHZ.rtf
sst file:1VHZ.sst
tem file:1VHZ.tem