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Pfam Domains mapped on to the structure: 1VGT

No. Chain ID Pfam ID Pfam Description Linkout - Pfam Linkout - CDD
1 A PF01128 Uncharacterized protein family UPF0007 PF01128 PF01128
2 A PF12804 MobA-like NTP transferase domain PF12804 PF12804

Conserved Domain Database Superfamily Annotations: 1VGT

No. PDB ID PSSM ID CDD Accession Superfamily Short Name Linkout - CDD
1 1VGT 133009 cd02516 CDP-ME_synthetase - cl11394
2 1VGT 212311 cl11394 Glyco_tranf_GTA_type superfamily - -
Structural Details of PDB entry 1VGT

Structural Details of PDB entry 1VGT

PDBid Chains Hinge Swapped Domain
1VGT A,B A:138-139,B:138-139;A:157-158,B:157-158 A:140-156,B:140-156

Swapped-domain interface residues and interactions:

Chains Residues
A 140, 141, 142, 143, 144, 145, 149, 150, 151, 152, 154, 155, 156, 159, 160, 161, 162, 163, 193, 201, 202, 203, 204,
B 140, 141, 142, 143, 144, 145, 149, 150, 151, 152, 154, 155, 156, 159, 160, 161, 162, 163, 189, 193, 201, 202, 203, 204,

Non-swapped-domain interface residues and interactions:

Chains Residues
A 132, 137, 138, 139, 158, 189, 190, 192, 196, 221, 222, 225, 226, 227,
B 109, 132, 139, 158, 190, 196, 215, 216, 218, 221, 222, 225, 226,

Swapped domains are represented using trasperent spheres.
Non-swapped part is represented using light color and cartoon representation.
Hinge region is shown in yellow color.

Mutations in critical regions:

Chains Hinge Domain swapped interface Non-swapped interface Swapped Domain
ANo mutationNo mutationNo mutationNo mutation
BNo mutationNo mutationNo mutationNo mutation
BNo mutationNo mutationNo mutationNo mutation

HIDE output:

Homologues found through HIDE algorithm

JMOL Visualization:

Jmol_logo            Jmol_logo            Jmol_logo

2D-plot:

A:1VGT B:1VGT

JOY Structural annotation for hinge hinge and swapped domain:

Hinge Swapped domain

JOY output:

ali file:1VGT.ali
atm file:1VGT.atm
cof file:1VGT.cof
hbd file:1VGT.hbd
html file:1VGT.html
pdb file:1VGT.pdb
ps file:1VGT.ps
psa file:1VGT.psa
rtf file:1VGT.rtf
sst file:1VGT.sst
tem file:1VGT.tem