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Pfam Domains mapped on to the structure: 1V8R

No. Chain ID Pfam ID Pfam Description Linkout - Pfam Linkout - CDD
1 A PF00293 NUDIX domain PF00293 PF00293

Conserved Domain Database Superfamily Annotations: 1V8R

No. PDB ID PSSM ID CDD Accession Superfamily Short Name Linkout - CDD
1 1V8R 72882 cd03424 ADPRase_NUDT5 - cl00447
2 1V8R 212606 cl00447 Nudix_Hydrolase superfamily - -
Structural Details of PDB entry 1V8R

Structural Details of PDB entry 1V8R

PDBid Chains Hinge Swapped Domain
1V8R A,B A:30-35,B:30-35 A:11-29,B:11-29

Swapped-domain interface residues and interactions:

Chains Residues
A 14, 15, 18, 19, 20, 22, 24, 25, 27, 28, 29,
B 14, 15, 18, 19, 20, 22, 24, 25, 27, 28, 29,

Non-swapped-domain interface residues and interactions:

Chains Residues
A 30, 31, 33, 54, 55, 56, 57, 59, 61, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 142, 145, 146, 151, 152, 153, 154, 157, 158, 161, 164, 165, 166, 168, 169,
B 30, 31, 33, 54, 55, 56, 57, 59, 61, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 142, 145, 146, 151, 152, 153, 154, 157, 158, 161, 164, 165, 166, 168,

Swapped domains are represented using trasperent spheres.
Non-swapped part is represented using light color and cartoon representation.
Hinge region is shown in yellow color.

Mutations in critical regions:

Chains Hinge Domain swapped interface Non-swapped interface Swapped Domain
ANo mutationNo mutationNo mutationNo mutation
BNo mutationNo mutationNo mutationNo mutation

HIDE output:

Homologues found through HIDE algorithm

JMOL Visualization:

Jmol_logo            Jmol_logo            Jmol_logo

2D-plot:

A:1V8R B:1V8R

JOY Structural annotation for hinge hinge and swapped domain:

Hinge Swapped domain

JOY output:

ali file:1V8R.ali
atm file:1V8R.atm
cof file:1V8R.cof
hbd file:1V8R.hbd
html file:1V8R.html
pdb file:1V8R.pdb
ps file:1V8R.ps
psa file:1V8R.psa
rtf file:1V8R.rtf
sst file:1V8R.sst
tem file:1V8R.tem