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Pfam Domains mapped on to the structure: 1V8D

No. Chain ID Pfam ID Pfam Description Linkout - Pfam Linkout - CDD
1 A PF04260 Protein of unknown function (DUF436) PF04260 PF04260

Conserved Domain Database Superfamily Annotations: 1V8D

No. PDB ID PSSM ID CDD Accession Superfamily Short Name Linkout - CDD
1 1V8D 186483 cl01860 DUF436 superfamily - -
Structural Details of PDB entry 1V8D

Structural Details of PDB entry 1V8D

PDBid Chains Hinge Swapped Domain
1V8D A,D,C,B A:207-210,D:207-210,C:207-210,B:207-210 A:211-232,D:211-232,C:211-232,B:211-232

Swapped-domain interface residues and interactions:

Chains Residues
A 114, 115, 116, 134, 135, 136, 137, 138, 139, 142, 211, 212, 213, 214, 215, 216, 217, 218, 219, 220, 223, 226, 227, 229, 230, 231, 232,
B 114, 115, 116, 134, 135, 136, 137, 138, 139, 142, 211, 212, 213, 214, 215, 216, 217, 218, 219, 220, 223, 226, 227, 229,
C 114, 115, 116, 134, 135, 136, 137, 138, 139, 142, 211, 212, 213, 214, 215, 216, 217, 218, 219, 220, 223, 226, 227,

Non-swapped-domain interface residues and interactions:

Chains Residues
A 83, 84, 86, 132, 133, 140, 141, 148, 151, 152, 157, 184, 208, 209, 210,
B 83, 84, 86, 87, 132, 133, 140, 141, 148, 151, 152, 161, 183, 208, 209, 210,
C 86, 132, 133, 140, 141, 148, 151, 152, 161, 184, 208, 209, 210,

Swapped domains are represented using trasperent spheres.
Non-swapped part is represented using light color and cartoon representation.
Hinge region is shown in yellow color.

Mutations in critical regions:

Chains Hinge Domain swapped interface Non-swapped interface Swapped Domain
ANo mutationNo mutationNo mutationNo mutation
DNo mutationNo mutationNo mutationNo mutation
CNo mutationNo mutationNo mutationNo mutation
BNo mutationNo mutationNo mutationNo mutation

HIDE output:

Homologues found through HIDE algorithm

JMOL Visualization:

Jmol_logo            Jmol_logo            Jmol_logo

2D-plot:

A:1V8D B:1V8D C:1V8D D:1V8D

JOY Structural annotation for hinge hinge and swapped domain:

Hinge Swapped domain

JOY output:

ali file:1V8D.ali
atm file:1V8D.atm
cof file:1V8D.cof
hbd file:1V8D.hbd
html file:1V8D.html
pdb file:1V8D.pdb
ps file:1V8D.ps
psa file:1V8D.psa
rtf file:1V8D.rtf
sst file:1V8D.sst
tem file:1V8D.tem