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Pfam Domains mapped on to the structure: 1V5W

No. Chain ID Pfam ID Pfam Description Linkout - Pfam Linkout - CDD
1 A PF08423 Rad51 PF08423 PF08423
2 A PF00154 recA bacterial DNA recombination protein PF00154 PF00154
3 A PF13481 AAA domain PF13481 PF13481
4 A PF06745 KaiC PF06745 PF06745

Conserved Domain Database Superfamily Annotations: 1V5W

No. PDB ID PSSM ID CDD Accession Superfamily Short Name Linkout - CDD
1 1V5W 29989 cd01123 Rad51_DMC1_radA - cl09099
2 1V5W 212613 cl09099 P-loop_NTPase superfamily - -
3 1V5W 212613 cl09099 P-loop_NTPase superfamily - -
Structural Details of PDB entry 1V5W

Structural Details of PDB entry 1V5W

PDBid Chains Hinge Swapped Domain
1V5W A,B A:94-119,B:94-119 A:83-93,B:83-93

Swapped-domain interface residues and interactions:

Chains Residues
A 83, 84, 85, 86, 87, 88, 89, 91, 92,
B 167, 182, 185, 186, 188, 189, 190, 191,

Non-swapped-domain interface residues and interactions:

Chains Residues
A 95, 117, 240, 243, 244, 247, 251, 254, 255, 258, 290, 292, 295, 298, 316, 317, 319, 320, 321, 340,
B 128, 129, 157, 161, 162, 163, 164, 165, 166, 192, 194, 195, 202, 205, 206, 209, 227, 228, 230, 231, 232, 233, 234, 235,

Swapped domains are represented using trasperent spheres.
Non-swapped part is represented using light color and cartoon representation.
Hinge region is shown in yellow color.

Mutations in critical regions:

Chains Hinge Domain swapped interface Non-swapped interface Swapped Domain
ANo mutationNo mutationNo mutationNo mutation
BNo mutationNo mutationNo mutationNo mutation

HIDE output:

Homologues found through HIDE algorithm

JMOL Visualization:

Jmol_logo            Jmol_logo            Jmol_logo

2D-plot:

A:1V5W B:1V5W

JOY Structural annotation for hinge hinge and swapped domain:

Hinge Swapped domain

JOY output:

ali file:1V5W.ali
atm file:1V5W.atm
cof file:1V5W.cof
hbd file:1V5W.hbd
html file:1V5W.html
pdb file:1V5W.pdb
ps file:1V5W.ps
psa file:1V5W.psa
rtf file:1V5W.rtf
sst file:1V5W.sst
tem file:1V5W.tem