Conserved Domain Database Superfamily Annotations: 1UPF

No.	PDB ID	PSSM ID	CDD Accession	Superfamily Short Name	Linkout - CDD
1	1UPF	206754	cd06223	PRTases_typeI -	cl00309
2	1UPF	212186	cl00309	PRTases_typeI	superfamily - -

Structural Details of PDB entry 1UPF PDBid Chains Hinge Swapped Domain 1UPF A,D A:94-95,D:94-95 A:21-93,D:21-93 Swapped-domain interface residues and interactions: Chains Residues A 40, 42, 43, 44, 46, 47, 50, 51, 53, 54, 55, 61, 64, 68, 71, 72, 75, 76, 78, 79, 83, 86, 88, 89, 90, 91, 92, 93, 98, 99, 231, 234, D 40, 42, 43, 44, 46, 47, 50, 53, 54, 55, 61, 64, 68, 71, 72, 75, 78, 79, 83, 86, 88, 89, 90, 91, 92, 93, 98, 99, 100, 230, 231, 232, 234, Non-swapped-domain interface residues and interactions: Chains Residues A 94, 95, 96, 101, 123, 124, 126, 224, 230, D 94, 96, 97, 101, 123, 124, 126, 224, 244,

Swapped domains are represented using trasperent spheres. Non-swapped part is represented using light color and cartoon representation. Hinge region is shown in yellow color.

Mutations in critical regions:

Chains	Hinge	Domain swapped interface	Non-swapped interface	Swapped Domain
A	No mutation	No mutation	No mutation	GLN(84)GLU,
D	No mutation	No mutation	No mutation	GLN(84)GLU,

HIDE output:

Homologues found through HIDE algorithm

JMOL Visualization:

2D-plot:

A:1UPF

JOY Structural annotation for hinge hinge and swapped domain:

Hinge	Swapped domain

JOY output:

ali file:	1UPF.ali
atm file:	1UPF.atm
cof file:	1UPF.cof
hbd file:	1UPF.hbd
html file:	1UPF.html
pdb file:	1UPF.pdb
ps file:	1UPF.ps
psa file:	1UPF.psa
rtf file:	1UPF.rtf
sst file:	1UPF.sst
tem file:	1UPF.tem