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Conserved Domain Database Superfamily Annotations: 1U42

No. PDB ID PSSM ID CDD Accession Superfamily Short Name Linkout - CDD

1 1U42 28992 cd01177 IPT_NFkappaB - cl15674

2 1U42 210144 cl15674 IPT superfamily - -

Structural Details of PDB entry 1U42

Structural Details of PDB entry 1U42

PDBid Chains Hinge Swapped Domain

1U42 A,B A:303-309,B:303-309 A:310-350,B:310-350

Swapped-domain interface residues and interactions:

Chains Residues
A 246, 248, 249, 256, 257, 258, 259, 260, 261, 262, 263, 264, 265, 266, 267, 268, 277, 278, 279, 280, 281, 282, 283, 284, 294, 295, 296, 297, 298, 302, 303, 310, 311, 312, 313, 314, 315, 316, 317, 319, 327, 328, 329, 330, 331, 332, 333, 334, 335, 338, 339, 340, 341, 342, 343, 344, 345, 346, 347, 348, 350,

B 246, 248, 249, 256, 257, 258, 259, 260, 261, 262, 263, 264, 265, 266, 267, 268, 277, 278, 279, 280, 281, 282, 283, 284, 294, 295, 296, 297, 298, 302, 303, 310, 311, 312, 313, 314, 315, 316, 317, 319, 327, 328, 329, 330, 331, 332, 333, 334, 335, 338, 339, 340, 341, 342, 343, 344, 345, 346, 347, 348,

Non-swapped-domain interface residues and interactions:

Chains Residues
A 247, 250, 251, 253, 254, 255, 269, 270, 271, 272, 273, 276, 292, 304, 305, 306, 307, 308, 309,

B 247, 250, 251, 253, 254, 255, 269, 270, 271, 272, 273, 276, 292, 304, 305, 306, 307, 308, 309,

Swapped domains are represented using trasperent spheres.
Non-swapped part is represented using light color and cartoon representation.
Hinge region is shown in yellow color.

Mutations in critical regions:

Chains Hinge Domain swapped interface Non-swapped interface Swapped Domain

A No mutation No mutation No mutation No mutation

B No mutation No mutation No mutation No mutation

HIDE output:

Homologues found through HIDE algorithm

JMOL Visualization:

2D-plot:

A:1U42 B:1U42

JOY Structural annotation for hinge hinge and swapped domain:

Hinge Swapped domain

JOY output:

ali file: 1U42.ali
atm file: 1U42.atm
cof file: 1U42.cof
hbd file: 1U42.hbd
html file: 1U42.html
pdb file: 1U42.pdb
ps file: 1U42.ps
psa file: 1U42.psa
rtf file: 1U42.rtf
sst file: 1U42.sst
tem file: 1U42.tem