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Pfam Domains mapped on to the structure: 1S5H

No. Chain ID Pfam ID Pfam Description Linkout - Pfam Linkout - CDD
1 A PF13895 Immunoglobulin domain PF13895 PF13895
2 A PF13927 Immunoglobulin domain PF13927 PF13927
3 B PF13895 Immunoglobulin domain PF13895 PF13895
4 C PF07885 Ion channel PF07885 PF07885
5 C PF00520 Ion transport protein PF00520 PF00520

Conserved Domain Database Superfamily Annotations: 1S5H

No. PDB ID PSSM ID CDD Accession Superfamily Short Name Linkout - CDD
1 1S5H 209363 Ion_trans_2 superfamily N -
Structural Details of PDB entry 1S5H

Structural Details of PDB entry 1S5H

PDBid Chains Hinge Swapped Domain
1S5H A,B A:41-45,B:42-46 A:1-40,B:1-41

Swapped-domain interface residues and interactions:

Chains Residues
A 1, 34, 36, 38,
B 35, 39, 104,

Non-swapped-domain interface residues and interactions:

Chains Residues
A 42, 43, 44, 46, 49, 50, 87, 89, 91, 94, 95, 96, 98, 100, 114, 116, 117, 118, 119, 120, 121, 123, 124, 127, 131, 133, 135, 137, 138, 160, 161, 162, 164, 167, 174, 176, 178, 180, 209, 211,
B 44, 45, 47, 50, 59, 61, 62, 63, 95, 99, 102, 103, 105, 106, 108, 109, 110, 127, 128, 129, 130, 131, 132, 134, 136, 142, 146, 148, 169, 171, 172, 174, 176, 181, 183, 185, 213, 218,

Swapped domains are represented using trasperent spheres.
Non-swapped part is reprented using light color and cartoon reprentation.
Hinge region is shown in yellow color.

Mutations in critical regions:

Chains Hinge Domain swapped interface Non-swapped interface Swapped Domain
ANo mutationNo mutationNo mutationNo mutation
BNo mutationNo mutationNo mutationNo mutation

HIDE output:

Homologues found through HIDE algorithm

JMOL Visualization:

Jmol_logo Jmol_logo

2D-plot:

3:1S5H A:1S5H B:1S5H

JOY Structural annotation for hinge hinge and swapped domain:

Hinge Swapped domain

JOY output:

ali file:1S5H.ali
atm file:1S5H.atm
cof file:1S5H.cof
hbd file:1S5H.hbd
html file:1S5H.html
pdb file:1S5H.pdb
ps file:1S5H.ps
psa file:1S5H.psa
rtf file:1S5H.rtf
sst file:1S5H.sst
tem file:1S5H.tem