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Pfam Domains mapped on to the structure: 1RA5

No. Chain ID Pfam ID Pfam Description Linkout - Pfam Linkout - CDD
1 A PF13594 Amidohydrolase PF13594 PF13594
2 A PF13147 Amidohydrolase PF13147 PF13147
3 A PF07969 Amidohydrolase family PF07969 PF07969

Conserved Domain Database Superfamily Annotations: 1RA5

No. PDB ID PSSM ID CDD Accession Superfamily Short Name Linkout - CDD
1 1RA5 30036 cd01293 Bact_CD - cl00281
2 1RA5 206955 cl00281 metallo-dependent_hydrolases superfamily - -
3 1RA5 206955 cl00281 metallo-dependent_hydrolases superfamily - -
Structural Details of PDB entry 1RA5

Structural Details of PDB entry 1RA5

PDBid Chains Hinge Swapped Domain
1RA5 A,D A:407-412,D:407-412 A:413-426,D:413-426

Swapped-domain interface residues and interactions:

Chains Residues
A 110, 112, 113, 324, 404, 405, 406, 407, 413, 414, 415, 416, 417, 420, 422, 424, 425, 426,
D 110, 112, 113, 324, 404, 405, 406, 407, 413, 414, 415, 416, 417, 420, 422, 424, 425,

Non-swapped-domain interface residues and interactions:

Chains Residues
A 68, 75, 106, 109, 114, 146, 251, 252, 280, 281, 285, 289, 290, 291, 292, 293, 297, 299, 300, 316, 320, 321, 322, 323, 329, 332, 333, 336, 337, 339, 341, 343, 346, 385, 388, 389, 391, 403, 408, 410, 411, 412,
D 68, 75, 106, 109, 114, 146, 251, 252, 280, 281, 285, 289, 290, 291, 292, 293, 297, 299, 300, 316, 320, 321, 322, 323, 329, 332, 333, 336, 337, 339, 341, 343, 346, 385, 388, 389, 391, 403, 408, 410, 411, 412,

Swapped domains are represented using trasperent spheres.
Non-swapped part is represented using light color and cartoon representation.
Hinge region is shown in yellow color.

Mutations in critical regions:

Chains Hinge Domain swapped interface Non-swapped interface Swapped Domain
ANo mutationNo mutationNo mutationNo mutation
DNo mutationNo mutationNo mutationNo mutation

HIDE output:

Homologues found through HIDE algorithm

JMOL Visualization:

Jmol_logo            Jmol_logo            Jmol_logo

2D-plot:

A:1RA5 D:1RA5

JOY Structural annotation for hinge hinge and swapped domain:

Hinge Swapped domain

JOY output:

ali file:1RA5.ali
atm file:1RA5.atm
cof file:1RA5.cof
hbd file:1RA5.hbd
html file:1RA5.html
pdb file:1RA5.pdb
ps file:1RA5.ps
psa file:1RA5.psa
rtf file:1RA5.rtf
sst file:1RA5.sst
tem file:1RA5.tem