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Pfam Domains mapped on to the structure: 1R9Z

No. Chain ID Pfam ID Pfam Description Linkout - Pfam Linkout - CDD
1 A PF13594 Amidohydrolase PF13594 PF13594
2 A PF13147 Amidohydrolase PF13147 PF13147
3 A PF07969 Amidohydrolase family PF07969 PF07969

Conserved Domain Database Superfamily Annotations: 1R9Z

No. PDB ID PSSM ID CDD Accession Superfamily Short Name Linkout - CDD
1 1R9Z 30036 cd01293 Bact_CD - cl00281
2 1R9Z 206955 cl00281 metallo-dependent_hydrolases superfamily - -
3 1R9Z 206955 cl00281 metallo-dependent_hydrolases superfamily - -
Structural Details of PDB entry 1R9Z

Structural Details of PDB entry 1R9Z

PDBid Chains Hinge Swapped Domain
1R9Z F,A,D,C,E,B F:408-410,A:408-410,D:408-410,C:408-410,E:408-410,B:408-410 F:411-426,A:411-426,D:411-426,C:411-426,E:411-426,B:411-426

Swapped-domain interface residues and interactions:

Chains Residues
A 110, 112, 113, 324, 404, 405, 406, 407, 408, 411, 412, 413, 414, 415, 416, 417, 420, 422, 424, 425, 426,
D 110, 112, 113, 324, 404, 405, 406, 407, 408, 411, 412, 413, 414, 415, 416, 417, 420, 422, 424, 425,

Non-swapped-domain interface residues and interactions:

Chains Residues
A 68, 70, 72, 75, 76, 77, 78, 79, 106, 109, 114, 146, 251, 252, 277, 280, 281, 285, 289, 290, 291, 292, 293, 297, 299, 300, 316, 320, 321, 322, 323, 329, 332, 333, 336, 337, 339, 341, 342, 343, 344, 345, 346, 385, 388, 389, 391, 403, 410,
D 68, 70, 72, 75, 76, 77, 78, 79, 106, 109, 114, 146, 251, 252, 277, 280, 281, 285, 289, 290, 291, 292, 293, 297, 299, 300, 316, 320, 321, 322, 323, 329, 332, 333, 336, 337, 339, 341, 342, 343, 344, 345, 346, 385, 388, 389, 391, 403, 410,

Swapped domains are represented using trasperent spheres.
Non-swapped part is represented using light color and cartoon representation.
Hinge region is shown in yellow color.

Mutations in critical regions:

Chains Hinge Domain swapped interface Non-swapped interface Swapped Domain
FNo mutationNo mutationNo mutationNo mutation
ANo mutationNo mutationNo mutationNo mutation
DNo mutationNo mutationNo mutationNo mutation
CNo mutationNo mutationNo mutationNo mutation
ENo mutationNo mutationNo mutationNo mutation
BNo mutationNo mutationNo mutationNo mutation

HIDE output:

Homologues found through HIDE algorithm

JMOL Visualization:

Jmol_logo            Jmol_logo            Jmol_logo

2D-plot:

A:1R9Z B:1R9Z C:1R9Z D:1R9Z E:1R9Z F:1R9Z

JOY Structural annotation for hinge hinge and swapped domain:

Hinge Swapped domain

JOY output:

ali file:1R9Z.ali
atm file:1R9Z.atm
cof file:1R9Z.cof
hbd file:1R9Z.hbd
html file:1R9Z.html
pdb file:1R9Z.pdb
ps file:1R9Z.ps
psa file:1R9Z.psa
rtf file:1R9Z.rtf
sst file:1R9Z.sst
tem file:1R9Z.tem