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Pfam Domains mapped on to the structure: 1QPS

No. Chain ID Pfam ID Pfam Description Linkout - Pfam Linkout - CDD
1 A PF02963 Restriction endonuclease EcoRI PF02963 PF02963

Gene Ontology Annotations: 1QPS

No. GO ID GO Description Linkout - AmiGO
1 GO:0009307 DNA restriction-modification system GO:0009307

Conserved Domain Database Superfamily Annotations: 1QPS

No. PDB ID PSSM ID CDD Accession Superfamily Short Name Linkout - CDD
1 1QPS 111811 cl03804 EcoRI superfamily - -
Structural Details of PDB entry 1QPS

Structural Details of PDB entry 1QPS

PDBid Chains Hinge Swapped Domain
1QPS A,B A:76-85,B:76-85 A:17-75,B:17-75

Swapped-domain interface residues and interactions:

Chains Residues
A 63, 70, 73, 74, 223, 225,
B 63, 70, 73, 74, 223, 225,

Non-swapped-domain interface residues and interactions:

Chains Residues
A 76, 77, 78, 79, 80, 82, 83, 86, 141, 142, 144, 145, 147, 148, 151, 152, 155, 158, 159, 161, 176, 193, 194, 196, 199, 201, 202, 203, 205, 206, 209, 210, 211, 213, 221, 222, 224, 228, 229, 230, 231, 232, 277,
B 76, 77, 78, 79, 80, 82, 83, 86, 141, 142, 144, 145, 147, 148, 151, 152, 155, 158, 159, 161, 176, 193, 194, 196, 199, 201, 202, 203, 205, 206, 209, 210, 211, 213, 221, 222, 224, 228, 229, 230, 231, 232,

Swapped domains are represented using trasperent spheres.
Non-swapped part is represented using light color and cartoon representation.
Hinge region is shown in yellow color.

Mutations in critical regions:

Chains Hinge Domain swapped interface Non-swapped interface Swapped Domain
ANo mutationNo mutationNo mutationNo mutation
BNo mutationNo mutationNo mutationNo mutation

HIDE output:

Homologues found through HIDE algorithm

JMOL Visualization:

Jmol_logo            Jmol_logo            Jmol_logo

2D-plot:

A:1QPS B:1QPS

JOY Structural annotation for hinge hinge and swapped domain:

Hinge Swapped domain

JOY output:

ali file:1QPS.ali
atm file:1QPS.atm
cof file:1QPS.cof
hbd file:1QPS.hbd
html file:1QPS.html
pdb file:1QPS.pdb
ps file:1QPS.ps
psa file:1QPS.psa
rtf file:1QPS.rtf
sst file:1QPS.sst
tem file:1QPS.tem