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Pfam Domains mapped on to the structure: 1QB2

No. Chain ID Pfam ID Pfam Description Linkout - Pfam Linkout - CDD
1 A PF02978 Signal peptide binding domain PF02978 PF02978

Gene Ontology Annotations: 1QB2

No. GO ID GO Description Linkout - AmiGO
1 GO:0048500 signal recognition particle GO:0048500

Conserved Domain Database Superfamily Annotations: 1QB2

No. PDB ID PSSM ID CDD Accession Superfamily Short Name Linkout - CDD
1 1QB2 202493 cl03814 SRP_SPB superfamily - -
Structural Details of PDB entry 1QB2

Structural Details of PDB entry 1QB2

PDBid Chains Hinge Swapped Domain
1QB2 A,B A:351-365,B:351-365 A:326-350,B:326-350

Swapped-domain interface residues and interactions:

Chains Residues
A 326, 327, 328, 329, 330, 332, 333, 335, 336, 337, 338, 339, 340, 341, 342, 343, 345, 346, 347, 349, 362, 365, 369, 372, 376, 387, 388, 389, 390, 392, 428,
B 326, 327, 328, 329, 330, 332, 333, 335, 336, 337, 338, 339, 340, 342, 343, 344, 345, 346, 347, 349, 350, 369, 372, 376, 387, 388, 389, 390, 392, 428,

Non-swapped-domain interface residues and interactions:

Chains Residues
A 358, 360, 361, 366, 373, 375, 379, 380, 384, 420, 424, 427, 431,
B 359, 360, 361, 362, 365, 373, 375, 379, 380, 382, 384, 420, 424, 427, 431,

Swapped domains are represented using trasperent spheres.
Non-swapped part is represented using light color and cartoon representation.
Hinge region is shown in yellow color.

Mutations in critical regions:

Chains Hinge Domain swapped interface Non-swapped interface Swapped Domain
ANo mutationNo mutationNo mutationNo mutation
BNo mutationNo mutationNo mutationNo mutation

HIDE output:

Homologues found through HIDE algorithm

JMOL Visualization:

Jmol_logo            Jmol_logo            Jmol_logo

2D-plot:

A:1QB2 B:1QB2

JOY Structural annotation for hinge hinge and swapped domain:

Hinge Swapped domain

JOY output:

ali file:1QB2.ali
atm file:1QB2.atm
cof file:1QB2.cof
hbd file:1QB2.hbd
html file:1QB2.html
pdb file:1QB2.pdb
ps file:1QB2.ps
psa file:1QB2.psa
rtf file:1QB2.rtf
sst file:1QB2.sst
tem file:1QB2.tem