Conserved Domain Database Superfamily Annotations: 1Q8M

No.	PDB ID	PSSM ID	CDD Accession	Superfamily Short Name	Linkout - CDD
1	1Q8M	212623	cl11960	Ig	superfamily - -

Structural Details of PDB entry 1Q8M PDBid Chains Hinge Swapped Domain 1Q8M A,D,C,B A:19-21,D:19-21,C:19-21,B:19-21 A:16-18,D:16-18,C:16-18,B:16-18 Swapped-domain interface residues and interactions: Chains Residues A 16, 17, 18, 38, 39, 40, 41, 42, 126, 127, B 16, 17, 18, 38, 39, 40, 41, 42, 126, 127, C 16, 17, 18, 38, 39, 40, 41, 42, 126, 127, D 16, 17, 18, 38, 39, 40, 41, 42, 126, 127, Non-swapped-domain interface residues and interactions: Chains Residues A 19, 20, 21, 22, 23, 24, 25, 26, 27, 29, 34, 35, 36, 56, 60, 61, 62, 63, 64, 66, 77, 78, 79, 81, 83, 86, 88, 90, 97, 99, 101, 110, 112, 114, 116, 117, 119, 120, 122, 123, 124, 125, 129, 130, 136, B 19, 20, 21, 22, 23, 24, 25, 26, 27, 29, 56, 60, 61, 62, 63, 64, 66, 72, 110, 112, 114, 116, 117, 119, 120, 122, 123, 124, 125, 129, 130, 136, C 19, 20, 21, 22, 23, 24, 25, 26, 27, 29, 34, 35, 36, 56, 60, 61, 62, 63, 64, 66, 77, 78, 79, 81, 83, 86, 88, 90, 97, 99, 101, 110, 112, 114, 116, 117, 119, 120, 122, 123, 124, 125, 128, 129, 130, 136, D 19, 20, 21, 22, 23, 24, 25, 26, 27, 29, 44, 56, 60, 61, 62, 63, 64, 66, 72, 110, 112, 114, 116, 117, 119, 120, 122, 123, 124, 125, 128, 129, 130,

Swapped domains are represented using trasperent spheres. Non-swapped part is represented using light color and cartoon representation. Hinge region is shown in yellow color.

Mutations in critical regions:

Chains	Hinge	Domain swapped interface	Non-swapped interface	Swapped Domain
A	No mutation	No mutation	No mutation	No mutation
D	No mutation	No mutation	No mutation	No mutation
C	No mutation	No mutation	No mutation	No mutation
B	No mutation	No mutation	No mutation	No mutation

HIDE output:

Homologues found through HIDE algorithm

JMOL Visualization:

2D-plot:

A:1Q8M

B:1Q8M

C:1Q8M

D:1Q8M

JOY Structural annotation for hinge hinge and swapped domain:

Hinge	Swapped domain

JOY output:

ali file:	1Q8M.ali
atm file:	1Q8M.atm
cof file:	1Q8M.cof
hbd file:	1Q8M.hbd
html file:	1Q8M.html
pdb file:	1Q8M.pdb
ps file:	1Q8M.ps
psa file:	1Q8M.psa
rtf file:	1Q8M.rtf
sst file:	1Q8M.sst
tem file:	1Q8M.tem