Home BrowseSearch Help Group

Pfam Domains mapped on to the structure: 1PYM

No. Chain ID Pfam ID Pfam Description Linkout - Pfam Linkout - CDD
1 A PF13714 Phosphoenolpyruvate phosphomutase PF13714 PF13714

Conserved Domain Database Superfamily Annotations: 1PYM

No. PDB ID PSSM ID CDD Accession Superfamily Short Name Linkout - CDD
1 1PYM 119340 cd00377 ICL_PEPM - cl00435
2 1PYM 212216 cl00435 ICL_KPHMT superfamily - -
3 1PYM 212216 cl00435 ICL_KPHMT superfamily - -
Structural Details of PDB entry 1PYM

Structural Details of PDB entry 1PYM

PDBid Chains Hinge Swapped Domain
1PYM A,D,C,B A:267-271,D:267-271,C:267-271,B:267-271 A:272-295,D:272-295,C:272-295,B:272-295

Swapped-domain interface residues and interactions:

Chains Residues
A 93, 137, 140, 144, 283, 284, 287, 288, 290, 291, 292, 293, 295,
B 93, 136, 137, 140, 144, 283, 284, 287, 290, 291, 292,

Non-swapped-domain interface residues and interactions:

Chains Residues
A 65, 72, 73, 76, 92, 94, 97, 98, 101, 102, 105, 106, 136, 147,
B 65, 72, 73, 76, 92, 94, 97, 98, 101, 102, 105, 106, 143, 147,

Swapped domains are represented using trasperent spheres.
Non-swapped part is represented using light color and cartoon representation.
Hinge region is shown in yellow color.

Mutations in critical regions:

Chains Hinge Domain swapped interface Non-swapped interface Swapped Domain
ANo mutationNo mutationNo mutationNo mutation
DNo mutationNo mutationNo mutationNo mutation
CNo mutationNo mutationNo mutationNo mutation
BNo mutationNo mutationNo mutationNo mutation

HIDE output:

Homologues found through HIDE algorithm

JMOL Visualization:

Jmol_logo            Jmol_logo            Jmol_logo

2D-plot:

A:1PYM B:1PYM C:1PYM D:1PYM

JOY Structural annotation for hinge hinge and swapped domain:

Hinge Swapped domain

JOY output:

ali file:1PYM.ali
atm file:1PYM.atm
cof file:1PYM.cof
hbd file:1PYM.hbd
html file:1PYM.html
pdb file:1PYM.pdb
ps file:1PYM.ps
psa file:1PYM.psa
rtf file:1PYM.rtf
sst file:1PYM.sst
tem file:1PYM.tem