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Pfam Domains mapped on to the structure: 1OM3

No. Chain ID Pfam ID Pfam Description Linkout - Pfam Linkout - CDD
1 L PF13927 Immunoglobulin domain PF13927 PF13927
2 L PF13927 Immunoglobulin domain PF13927 PF13927

Conserved Domain Database Superfamily Annotations: 1OM3

No. PDB ID PSSM ID CDD Accession Superfamily Short Name Linkout - CDD
1 1OM3 212623 cl11960 Ig superfamily - -
2 1OM3 143186 cd04985 IgC_CH1 - cl11960
3 1OM3 212623 cl11960 Ig superfamily - -
4 1OM3 212623 cl11960 Ig superfamily - -
Structural Details of PDB entry 1OM3

Structural Details of PDB entry 1OM3

PDBid Chains Hinge Swapped Domain
1OM3 H,M,K,L H:113-117,M:113-117,K:113-117,L:113-117 H:118-228,M:118-213,K:118-229,L:118-213

Swapped-domain interface residues and interactions:

Chains Residues
H 11, 122, 123, 124, 125, 137, 139, 143, 145, 172, 174, 175, 177, 178, 179, 180, 182, 183, 188, 190, 192, 221, 228,
K 11, 112, 122, 123, 124, 125, 137, 139, 143, 145, 172, 173, 174, 175, 177, 178, 179, 180, 182, 183, 188, 190, 192, 221, 228, 229,
L 118, 119, 121, 122, 123, 124, 126, 127, 128, 129, 131, 133, 135, 137, 138, 160, 161, 162, 163, 164, 167, 174, 176, 178, 180, 183, 213,
M 118, 119, 121, 122, 123, 124, 126, 127, 128, 129, 131, 133, 135, 137, 138, 160, 161, 162, 163, 164, 167, 174, 176, 178, 180, 183,

Non-swapped-domain interface residues and interactions:

Chains Residues
H 7, 8, 17, 18, 19, 21, 39, 43, 44, 45, 47, 53, 54, 57, 58, 68, 70, 72, 74, 75, 77, 79, 81, 91, 95, 100, 101, 103, 104, 105, 108, 110, 112,
K 7, 8, 17, 18, 19, 21, 33, 39, 42, 43, 44, 45, 47, 50, 52, 53, 54, 56, 57, 58, 68, 70, 72, 74, 75, 77, 79, 81, 91, 95, 100, 101, 103, 104, 105, 110,
L 32, 36, 38, 40, 41, 43, 44, 46, 49, 55, 85, 87, 89, 91, 92, 93, 94, 95, 96, 98, 99, 100, 116,
M 32, 36, 38, 40, 41, 43, 44, 46, 49, 55, 85, 87, 89, 91, 92, 93, 94, 95, 96, 98, 99, 100, 116,

Swapped domains are represented using trasperent spheres.
Non-swapped part is represented using light color and cartoon representation.
Hinge region is shown in yellow color.

Mutations in critical regions:

Chains Hinge Domain swapped interface Non-swapped interface Swapped Domain
HNo mutationNo mutationNo mutationNo mutation
MNo mutationNo mutationNo mutationNo mutation
KNo mutationNo mutationNo mutationNo mutation
LNo mutationNo mutationNo mutationNo mutation

HIDE output:

Homologues found through HIDE algorithm

JMOL Visualization:

Jmol_logo            Jmol_logo            Jmol_logo

2D-plot:

H:1OM3 K:1OM3 L:1OM3 M:1OM3

JOY Structural annotation for hinge hinge and swapped domain:

Hinge Swapped domain

JOY output:

ali file:1OM3.ali
atm file:1OM3.atm
cof file:1OM3.cof
hbd file:1OM3.hbd
html file:1OM3.html
pdb file:1OM3.pdb
ps file:1OM3.ps
psa file:1OM3.psa
rtf file:1OM3.rtf
sst file:1OM3.sst
tem file:1OM3.tem